Difference between revisions of "SJ13939"

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(Created page with "Category:gene == Gene SJ22529 == * transcription-direction: ** negative * right-end-position: ** 91661 * left-end-position: ** 84007 * centisome-position: ** 48.17827...")
(Created page with "Category:gene == Gene SJ13939 == * transcription-direction: ** positive * right-end-position: ** 90896 * left-end-position: ** 83855 * centisome-position: ** 25.504276...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ22529 ==
+
== Gene SJ13939 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 91661
+
** 90896
 
* left-end-position:
 
* left-end-position:
−
** 84007
+
** 83855
 
* centisome-position:
 
* centisome-position:
−
** 48.17827    
+
** 25.504276    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[DCTP-PYROPHOSPHATASE-RXN]]
+
* [[ASNSYNA-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DUTP-PYROP-RXN]]
+
* [[ASNSYNB-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
+
* [[GLUTAMIN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NADPYROPHOSPHAT-RXN]]
+
* [[RXN-16820]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NUCLEOTIDE-PYROPHOSPHATASE-RXN]]
+
* [[RXN-16821]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-11396]]
+
* [[RXN0-2023]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14139]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14140]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-383]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-384]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-385]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-4401]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-5107]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-6382]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-5144]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ASPARAGINESYN-PWY]]
−
* [[PWY-7206]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[ASPARAGINE-BIOSYNTHESIS]]
−
* [[PWY-7187]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
* [[CITRULBIO-PWY]]
−
* [[PWY0-166]]
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
** '''14''' reactions found over '''13''' reactions in the full pathway
+
* [[GLUTAMINDEG-PWY]]
−
* [[PWY-7184]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7889]]
−
* [[PWY-6545]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7892]]
−
* [[PWY-6147]]
+
** '''3''' reactions found over '''11''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[NAD-BIOSYNTHESIS-II]]
+
{{#set: right-end-position=90896}}
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
{{#set: left-end-position=83855}}
−
* [[PWY-7761]]
+
{{#set: centisome-position=25.504276   }}
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5381]]
 
−
** '''6''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PYRIDNUCSAL-PWY]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6502]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7821]]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=91661}}
 
−
{{#set: left-end-position=84007}}
 
−
{{#set: centisome-position=48.17827   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=14}}
+
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=6}}

Latest revision as of 11:00, 18 March 2021

Gene SJ13939

  • transcription-direction:
    • positive
  • right-end-position:
    • 90896
  • left-end-position:
    • 83855
  • centisome-position:
    • 25.504276

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • ASPARAGINESYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • ASPARAGINE-BIOSYNTHESIS
    • 1 reactions found over 1 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • GLUTAMINDEG-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7889
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7892
    • 3 reactions found over 11 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13939&oldid=131624"