Difference between revisions of "SJ13972"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD1F-132 CPD1F-132] == * common-name: ** ent-kaur-16-en-19-oate * smiles: ** c=c1(c4(cc3(c1)(c...")
(Created page with "Category:gene == Gene SJ13972 == * transcription-direction: ** negative * right-end-position: ** 615782 * left-end-position: ** 606759 * centisome-position: ** 83.566986...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD1F-132 CPD1F-132] ==
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== Gene SJ13972 ==
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* common-name:
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* transcription-direction:
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** ent-kaur-16-en-19-oate
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** negative
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* smiles:
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* right-end-position:
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** c=c1(c4(cc3(c1)(cc[ch]2(c(c)(c([o-])=o)cccc(c)2[ch]3cc4))))
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** 615782
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* inchi-key:
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* left-end-position:
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** nikhguqulkyige-otcxfqbhsa-m
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** 606759
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* molecular-weight:
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* centisome-position:
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** 301.448
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** 83.566986   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[1.14.13.79-RXN]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[RXN-7580]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[ACYLCOASYN-RXN]]
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{{#set: common-name=ent-kaur-16-en-19-oate}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=nikhguqulkyige-otcxfqbhsa-m}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: molecular-weight=301.448}}
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[LINOLENOYL-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[R223-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12184]]
 +
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-12978]]
 +
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13290]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-13614]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16380]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16389]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16393]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16401]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16402]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16415]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16418]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-7904]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9623]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9644]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9673]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-7238]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-7239]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-7248]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN66-469]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN66-477]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN66-480]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN66-483]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN66-484]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[TRANS-RXN0-623]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[llcoas]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-7288]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-391]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[FAO-PWY]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5136]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7049]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7724]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6920]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[P221-PWY]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6733]]
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** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7094]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5989]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-321]]
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** '''3''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-1121]]
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** '''9''' reactions found over '''20''' reactions in the full pathway
 +
* [[PWY-5971]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-6873]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7033]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6803]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5885]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5143]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5972]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6001]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5147]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6000]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY66-387]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY66-388]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-389]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
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{{#set: right-end-position=615782}}
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{{#set: left-end-position=606759}}
 +
{{#set: centisome-position=83.566986    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=28}}
 +
{{#set: nb pathway associated=26}}

Latest revision as of 11:02, 18 March 2021

Gene SJ13972

  • transcription-direction:
    • negative
  • right-end-position:
    • 615782
  • left-end-position:
    • 606759
  • centisome-position:
    • 83.566986

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7288
    • 4 reactions found over 5 reactions in the full pathway
  • PWY66-391
    • 6 reactions found over 7 reactions in the full pathway
  • FAO-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7049
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7724
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6920
    • 5 reactions found over 6 reactions in the full pathway
  • P221-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6733
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-7094
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5989
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-321
    • 3 reactions found over 16 reactions in the full pathway
  • PWY-1121
    • 9 reactions found over 20 reactions in the full pathway
  • PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-6873
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7033
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6803
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5885
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5143
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5972
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6001
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5147
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6000
    • 2 reactions found over 2 reactions in the full pathway
  • PWY66-387
    • 4 reactions found over 6 reactions in the full pathway
  • PWY66-388
    • 2 reactions found over 7 reactions in the full pathway
  • PWY66-389
    • 4 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ13972&oldid=132260"