Difference between revisions of "SJ14703"

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(Created page with "Category:gene == Gene SJ18402 == * transcription-direction: ** positive * right-end-position: ** 89915 * left-end-position: ** 62103 * centisome-position: ** 25.144646...")
(Created page with "Category:gene == Gene SJ04442 == * transcription-direction: ** negative * right-end-position: ** 452928 * left-end-position: ** 440350 * centisome-position: ** 86.19879...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18402 ==
+
== Gene SJ04442 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 89915
+
** 452928
 
* left-end-position:
 
* left-end-position:
−
** 62103
+
** 440350
 
* centisome-position:
 
* centisome-position:
−
** 25.144646    
+
** 86.19879    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[LUMAZINESYN-RXN]]
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[5-NUCLEOTID-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[AMP-DEPHOSPHORYLATION-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[NUCLEOTIDASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14025]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14026]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14227]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14473]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17947]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17948]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-5841]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7607]]
+
* [[RXN-9003]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7609]]
+
* [[RXN-9384]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[XMPXAN-RXN]]
+
* [[RXN0-5180]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6167]]
−
* [[SALVADEHYPOX-PWY]]
+
** '''5''' reactions found over '''10''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-6168]]
−
* [[PWY-7821]]
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
* [[RIBOSYN2-PWY]]
−
* [[PWY-7185]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-7235]]
−
* [[PWY-5381]]
+
** '''3''' reactions found over '''n.a''' reactions in the full pathway
−
** '''6''' reactions found over '''11''' reactions in the full pathway
+
* [[PWY3O-19]]
−
* [[NAD-BIOSYNTHESIS-II]]
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-5815]]
−
* [[PWY-6596]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[PWY-6606]]
+
{{#set: right-end-position=452928}}
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
{{#set: left-end-position=440350}}
−
* [[PWY-6607]]
+
{{#set: centisome-position=86.19879   }}
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_sterols_curated}}
−
* [[PWY-6608]]
+
{{#set: nb reaction associated=4}}
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
{{#set: nb pathway associated=6}}
−
* [[PWY-5695]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=89915}}
 
−
{{#set: left-end-position=62103}}
 
−
{{#set: centisome-position=25.144646   }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=14}}
 
−
{{#set: nb pathway associated=10}}
 

Revision as of 20:25, 18 December 2020

Gene SJ04442

  • transcription-direction:
    • negative
  • right-end-position:
    • 452928
  • left-end-position:
    • 440350
  • centisome-position:
    • 86.19879

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6167
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-6168
    • 7 reactions found over 9 reactions in the full pathway
  • RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7235
    • 3 reactions found over n.a reactions in the full pathway
  • PWY3O-19
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5815
    • 1 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ14703&oldid=43468"