Difference between revisions of "SJ14774"

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(Created page with "Category:gene == Gene SJ20943 == * transcription-direction: ** positive * right-end-position: ** 198154 * left-end-position: ** 193169 * centisome-position: ** 95.61023...")
(Created page with "Category:gene == Gene SJ22520 == * transcription-direction: ** positive * right-end-position: ** 126489 * left-end-position: ** 117679 * centisome-position: ** 67.01652...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ20943 ==
+
== Gene SJ22520 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 198154
+
** 126489
 
* left-end-position:
 
* left-end-position:
−
** 193169
+
** 117679
 
* centisome-position:
 
* centisome-position:
−
** 95.61023    
+
** 67.01652    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[F16ALDOLASE-RXN]]
−
* [[2.6.1.57-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[ASPAMINOTRANS-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[HISTAMINOTRANS-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[PHEAMINOTRANS-RXN]]
+
* [[RXN-8631]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10814]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11737]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13697]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14147]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[TYROSINE-AMINOTRANSFERASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ASPARAGINE-DEG1-PWY-1]]
+
* [[CALVIN-PWY]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[ASPARTATESYN-PWY]]
+
* [[GLUCONEO-PWY]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[GLUTDEG-PWY]]
+
* [[PWY-7385]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5913]]
+
* [[P341-PWY]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]]
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7383]]
+
* [[PWY66-399]]
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7117]]
+
* [[PWY-1042]]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7115]]
 
 
** '''9''' reactions found over '''10''' reactions in the full pathway
 
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[ASPARTATE-DEG1-PWY]]
+
* [[SUCSYN-PWY]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
+
* [[P185-PWY]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[HISTSYN-PWY]]
+
* [[PWY-1861]]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7432]]
+
* [[PWY-5484]]
−
** '''3''' reactions found over '''2''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-5079]]
+
* [[PWY-6142]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
* [[ANAPHENOXI-PWY]]
+
* [[PWY66-373]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PHESYN]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6318]]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6638]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6642]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6643]]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-3581]]
 
−
** '''6''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY3O-4108]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5048]]
 
−
** '''1''' reactions found over '''10''' reactions in the full pathway
 
−
* [[TYRFUMCAT-PWY]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7514]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5886]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7518]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TYRSYN]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5754]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5151]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=198154}}
+
{{#set: right-end-position=126489}}
−
{{#set: left-end-position=193169}}
+
{{#set: left-end-position=117679}}
−
{{#set: centisome-position=95.61023   }}
+
{{#set: centisome-position=67.01652   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=9}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=28}}
+
{{#set: nb pathway associated=14}}

Revision as of 12:57, 14 January 2021

Gene SJ22520

  • transcription-direction:
    • positive
  • right-end-position:
    • 126489
  • left-end-position:
    • 117679
  • centisome-position:
    • 67.01652

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-7385
    • 7 reactions found over 9 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY66-373
    • 3 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ14774&oldid=79563"