Difference between revisions of "SJ14916"

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(Created page with "Category:gene == Gene SJ07398 == * transcription-direction: ** negative * right-end-position: ** 29459 * left-end-position: ** 27019 * centisome-position: ** 39.709297...")
 
(Created page with "Category:gene == Gene SJ14916 == * transcription-direction: ** positive * right-end-position: ** 192746 * left-end-position: ** 188893 * centisome-position: ** 61.996567...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ07398 ==
+
== Gene SJ14916 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 29459
+
** 192746
 
* left-end-position:
 
* left-end-position:
−
** 27019
+
** 188893
 
* centisome-position:
 
* centisome-position:
−
** 39.709297    
+
** 61.996567    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[2.4.1.223-RXN]]
+
* [[3PGAREARR-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10606]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-15509]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10607]]
+
* [[RXN-15510]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10608]]
+
* [[RXN-15511]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10609]]
+
* [[RXN-15512]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10616]]
+
* [[RXN-15513]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10617]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10618]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10619]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10784]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11060]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13607]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13608]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14361]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9000]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-162]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-168]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-83]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[UDP-GLUCURONOSYLTRANSFERASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6558]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''7''' reactions found over '''13''' reactions in the full pathway
+
* [[PWY-6142]]
−
* [[PWY-6261]]
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
** '''10''' reactions found over '''15''' reactions in the full pathway
+
* [[PWY-7003]]
−
* [[PWY-6313]]
+
** '''8''' reactions found over '''6''' reactions in the full pathway
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-7218]]
−
* [[PWY-6398]]
+
** '''7''' reactions found over '''4''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[GLYCOLYSIS]]
−
* [[PWY-5756]]
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
* [[P341-PWY]]
−
* [[PWY66-221]]
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
** '''5''' reactions found over '''18''' reactions in the full pathway
+
* [[PWY-5723]]
−
* [[PWY66-201]]
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
** '''3''' reactions found over '''16''' reactions in the full pathway
+
* [[P124-PWY]]
−
{{#set: transcription-direction=negative}}
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
{{#set: right-end-position=29459}}
+
* [[PWY-2221]]
−
{{#set: left-end-position=27019}}
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
{{#set: centisome-position=39.709297   }}
+
* [[PWY-5484]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-1042]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6886]]
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6901]]
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7124]]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-6405]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-1622]]
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P122-PWY]]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=192746}}
 +
{{#set: left-end-position=188893}}
 +
{{#set: centisome-position=61.996567   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=19}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=19}}

Latest revision as of 11:10, 18 March 2021

Gene SJ14916

  • transcription-direction:
    • positive
  • right-end-position:
    • 192746
  • left-end-position:
    • 188893
  • centisome-position:
    • 61.996567

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-7003
    • 8 reactions found over 6 reactions in the full pathway
  • PWY-7218
    • 7 reactions found over 4 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-2221
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-6901
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-6405
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ14916&oldid=136585"