Difference between revisions of "SJ15388"

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(Created page with "Category:gene == Gene SJ21645 == * transcription-direction: ** negative * right-end-position: ** 89757 * left-end-position: ** 68910 * centisome-position: ** 36.52951...")
(Created page with "Category:gene == Gene SJ15388 == * transcription-direction: ** positive * right-end-position: ** 482236 * left-end-position: ** 467092 * centisome-position: ** 66.27816...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ21645 ==
+
== Gene SJ15388 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 89757
+
** 482236
 
* left-end-position:
 
* left-end-position:
−
** 68910
+
** 467092
 
* centisome-position:
 
* centisome-position:
−
** 36.52951    
+
** 66.27816    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[TRIOSEPISOMERIZATION-RXN]]
−
* [[3.6.3.1-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[ATPASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
** Category: [[annotation]]
+
== Pathway(s) associated ==
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[RXN-12195]]
+
* [[GLUCONEO-PWY]]
−
** Category: [[annotation]]
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[CALVIN-PWY]]
−
* [[RXN-12196]]
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[P185-PWY]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[RXN0-5462]]
+
* [[PWY-5484]]
−
** Category: [[annotation]]
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[PWY-1042]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P341-PWY]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6142]]
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY66-373]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7003]]
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s) associated ==
+
{{#set: transcription-direction=positive}}
−
* [[PWY-7210]]
+
{{#set: right-end-position=482236}}
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
{{#set: left-end-position=467092}}
−
* [[PWY-7198]]
+
{{#set: centisome-position=66.27816   }}
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7184]]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6545]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=89757}}
 
−
{{#set: left-end-position=68910}}
 
−
{{#set: centisome-position=36.52951   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=12}}

Latest revision as of 11:06, 18 March 2021

Gene SJ15388

  • transcription-direction:
    • positive
  • right-end-position:
    • 482236
  • left-end-position:
    • 467092
  • centisome-position:
    • 66.27816

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY66-373
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7003
    • 8 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ15388&oldid=134580"