Difference between revisions of "SJ15628"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3Z-PHYTOCHROMOBILIN 3Z-PHYTOCHROMOBILIN] == * common-name: ** (3z)-phytochromobilin * smiles: *...")
(Created page with "Category:gene == Gene SJ09797 == * transcription-direction: ** positive * right-end-position: ** 26228 * left-end-position: ** 17391 * centisome-position: ** 47.34306...")
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3Z-PHYTOCHROMOBILIN 3Z-PHYTOCHROMOBILIN] ==
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== Gene SJ09797 ==
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* common-name:
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* transcription-direction:
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** (3z)-phytochromobilin
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** positive
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* smiles:
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* right-end-position:
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** cc=c1(c(c)c(nc1=cc4(=c(c)c(ccc([o-])=o)=c(c=c2(c(ccc([o-])=o)=c(c)c(=n2)c=c3(c(c)=c(c=c)c(=o)n3)))n4))=o)
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** 26228
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* inchi-key:
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* left-end-position:
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** dkmlmzvdtgoegu-aikfxvfzsa-l
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** 17391
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* molecular-weight:
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* centisome-position:
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** 582.655
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** 47.34306   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to produce the compound ==
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* [[S.japonica_sterols_curated]]
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* [[1.3.7.4-RXN]]
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== Reaction(s) associated ==
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== Reaction(s) of unknown directionality ==
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* [[QUERCETIN-3-O-METHYLTRANSFERASE-RXN]]
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{{#set: common-name=(3z)-phytochromobilin}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=dkmlmzvdtgoegu-aikfxvfzsa-l}}
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=582.655}}
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* [[RXN-1104]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-1143]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-13935]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-3422]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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* [[PWY-6064]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7161]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2181]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7498]]
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** '''2''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7186]]
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** '''2''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-1121]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-361]]
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** '''7''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-5168]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7163]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=26228}}
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{{#set: left-end-position=17391}}
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{{#set: centisome-position=47.34306    }}
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{{#set: organism associated=S.japonica_sterols_curated}}
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{{#set: nb reaction associated=5}}
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{{#set: nb pathway associated=9}}

Revision as of 20:22, 18 December 2020

Gene SJ09797

  • transcription-direction:
    • positive
  • right-end-position:
    • 26228
  • left-end-position:
    • 17391
  • centisome-position:
    • 47.34306

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6064
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7161
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-2181
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7498
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-7186
    • 2 reactions found over 12 reactions in the full pathway
  • PWY-1121
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-361
    • 7 reactions found over 15 reactions in the full pathway
  • PWY-5168
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7163
    • 1 reactions found over 4 reactions in the full pathway




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