Difference between revisions of "SJ15690"
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(Created page with "Category:gene == Gene SJ17873 == * transcription-direction: ** positive * right-end-position: ** 119040 * left-end-position: ** 94718 * centisome-position: ** 37.150867...") |
(Created page with "Category:gene == Gene SJ03066 == * transcription-direction: ** negative * right-end-position: ** 85681 * left-end-position: ** 75918 * centisome-position: ** 60.4563 =...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ03066 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 85681 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 75918 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 60.4563 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[4-COUMARATE--COA-LIGASE-RXN]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[6.2.1.34-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[O-SUCCINYLBENZOATE-COA-LIG-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-10919]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[RXN-1126]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | + | * [[RXN-2001]] | |
− | + | ** Category: [[orthology]] | |
− | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
− | * [[RXN- | + | * [[RXN-7614]] |
− | ** Category: [[ | ||
− | *** source: [[ | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | * [[RXN- | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-9623]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[llcoas]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''4''' reactions found over '''4''' reactions in the full pathway | + | * [[PWY-7397]] |
− | * [[PWY- | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | ** '''3''' reactions found over '''3''' reactions in the full pathway | + | * [[PWY-6320]] |
− | * [[PWY- | + | ** '''1''' reactions found over '''5''' reactions in the full pathway |
+ | * [[PWY-6435]] | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY1F-FLAVSYN]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-361]] | ||
+ | ** '''7''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5135]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7398]] | ||
+ | ** '''3''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-7046]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7897]] | ||
+ | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5754]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6920]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6982]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6343]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-1121]] | ||
+ | ** '''9''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY-5837]] | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6673]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6457]] | ||
** '''1''' reactions found over '''2''' reactions in the full pathway | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-5971]] |
− | ** ''' | + | ** '''31''' reactions found over '''31''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5972]] |
− | ** ''' | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
− | + | </div> | |
− | + | {{#set: transcription-direction=negative}} | |
− | + | {{#set: right-end-position=85681}} | |
− | + | {{#set: left-end-position=75918}} | |
− | + | {{#set: centisome-position=60.4563 }} | |
− | |||
− | {{#set: transcription-direction= | ||
− | {{#set: right-end-position= | ||
− | {{#set: left-end-position= | ||
− | {{#set: centisome-position= | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=9}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=19}} |
Revision as of 15:23, 5 January 2021
Contents
Gene SJ03066
- transcription-direction:
- negative
- right-end-position:
- 85681
- left-end-position:
- 75918
- centisome-position:
- 60.4563
Organism(s) associated with this gene
Reaction(s) associated
- 4-COUMARATE--COA-LIGASE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- 6.2.1.34-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- O-SUCCINYLBENZOATE-COA-LIG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10919
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-1126
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-2001
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7614
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9623
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- llcoas
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-7397
- 3 reactions found over 4 reactions in the full pathway
- PWY-6320
- 1 reactions found over 5 reactions in the full pathway
- PWY-6435
- 4 reactions found over 5 reactions in the full pathway
- PWY1F-FLAVSYN
- 5 reactions found over 5 reactions in the full pathway
- PWY-361
- 7 reactions found over 15 reactions in the full pathway
- PWY-5135
- 2 reactions found over 4 reactions in the full pathway
- PWY-7398
- 3 reactions found over 13 reactions in the full pathway
- PWY-7046
- 2 reactions found over 6 reactions in the full pathway
- PWY-7897
- 3 reactions found over 15 reactions in the full pathway
- PWY-5754
- 2 reactions found over 5 reactions in the full pathway
- PWY-6920
- 5 reactions found over 6 reactions in the full pathway
- PWY-6982
- 1 reactions found over 3 reactions in the full pathway
- PWY-6343
- 1 reactions found over 3 reactions in the full pathway
- PWY-1121
- 9 reactions found over 19 reactions in the full pathway
- PWY-5837
- 4 reactions found over 7 reactions in the full pathway
- PWY-6673
- 1 reactions found over 3 reactions in the full pathway
- PWY-6457
- 1 reactions found over 2 reactions in the full pathway
- PWY-5971
- 31 reactions found over 31 reactions in the full pathway
- PWY-5972
- 4 reactions found over 6 reactions in the full pathway