Difference between revisions of "SJ15840"
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(Created page with "Category:gene == Gene SJ19466 == * transcription-direction: ** positive * right-end-position: ** 202353 * left-end-position: ** 197324 * centisome-position: ** 87.02233...") |
(Created page with "Category:gene == Gene SJ13018 == * transcription-direction: ** negative * right-end-position: ** 236996 * left-end-position: ** 235423 * centisome-position: ** 67.83449...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ13018 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 236996 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 235423 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 67.83449 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[ADCLY-RXN]] |
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[D-ALANINE-AMINOTRANSFERASE-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[ | + | * [[PWY-6543]] |
| − | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[ILEUSYN-PWY]] |
| − | {{#set: right-end-position= | + | ** '''4''' reactions found over '''7''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[ILEUDEG-PWY]] |
| − | {{#set: centisome-position= | + | ** '''5''' reactions found over '''6''' reactions in the full pathway |
| + | * [[PWY-5078]] | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-5103]] | ||
| + | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-5104]] | ||
| + | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-5101]] | ||
| + | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-5108]] | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=236996}} | ||
| + | {{#set: left-end-position=235423}} | ||
| + | {{#set: centisome-position=67.83449 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
Revision as of 15:15, 5 January 2021
Contents
Gene SJ13018
- transcription-direction:
- negative
- right-end-position:
- 236996
- left-end-position:
- 235423
- centisome-position:
- 67.83449
Organism(s) associated with this gene
Reaction(s) associated
- ADCLY-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- BRANCHED-CHAINAMINOTRANSFERILEU-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- D-ALANINE-AMINOTRANSFERASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6543
- 2 reactions found over 2 reactions in the full pathway
- ILEUSYN-PWY
- 4 reactions found over 7 reactions in the full pathway
- ILEUDEG-PWY
- 5 reactions found over 6 reactions in the full pathway
- PWY-5078
- 2 reactions found over 3 reactions in the full pathway
- PWY-5103
- 3 reactions found over 7 reactions in the full pathway
- PWY-5104
- 2 reactions found over 6 reactions in the full pathway
- PWY-5101
- 4 reactions found over 8 reactions in the full pathway
- PWY-5108
- 2 reactions found over 3 reactions in the full pathway
