Difference between revisions of "SJ16017"

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(Created page with "Category:gene == Gene SJ06969 == * transcription-direction: ** positive * right-end-position: ** 179426 * left-end-position: ** 171123 * centisome-position: ** 36.6798...")
(Created page with "Category:gene == Gene SJ15444 == * transcription-direction: ** negative * right-end-position: ** 285189 * left-end-position: ** 273359 * centisome-position: ** 92.48161...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ06969 ==
+
== Gene SJ15444 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 179426
+
** 285189
 
* left-end-position:
 
* left-end-position:
−
** 171123
+
** 273359
 
* centisome-position:
 
* centisome-position:
−
** 36.6798    
+
** 92.48161    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ESTRADIOL-17-BETA-DEHYDROGENASE-RXN]]
+
* [[325-BISPHOSPHATE-NUCLEOTIDASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12560]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12968]]
+
* [[MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12994]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[R163-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10949]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13279]]
+
* [[RXN-10952]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13298]]
+
* [[RXN-10953]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13299]]
+
* [[RXN-10954]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13300]]
+
* [[RXN-7253]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13301]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[RXN0-5408]]
−
* [[RXN-13443]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14484]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14493]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16020]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16095]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16112]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16129]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16154]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17109]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-5901]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-7698]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-2301]]
−
* [[PWY66-380]]
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-6363]]
−
* [[PWY-7948]]
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-4702]]
−
* [[PWY-7592]]
+
** '''3''' reactions found over '''14''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[PWY-5353]]
+
{{#set: right-end-position=285189}}
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
{{#set: left-end-position=273359}}
−
* [[PWY-7602]]
+
{{#set: centisome-position=92.48161   }}
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7724]]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7619]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7036]]
 
−
** '''14''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-7727]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7053]]
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7606]]
 
−
** '''8''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-6433]]
 
−
** '''17''' reactions found over '''22''' reactions in the full pathway
 
−
* [[PWY-7049]]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6958]]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6598]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7601]]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7725]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7728]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7726]]
 
−
** '''8''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5676]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY1-3]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7216]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5741]]
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5080]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=179426}}
 
−
{{#set: left-end-position=171123}}
 
−
{{#set: centisome-position=36.6798   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=20}}
+
{{#set: nb reaction associated=10}}
−
{{#set: nb pathway associated=24}}
+
{{#set: nb pathway associated=3}}

Revision as of 08:21, 15 March 2021

Gene SJ15444

  • transcription-direction:
    • negative
  • right-end-position:
    • 285189
  • left-end-position:
    • 273359
  • centisome-position:
    • 92.48161

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-2301
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6363
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-4702
    • 3 reactions found over 14 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16017&oldid=122410"