Difference between revisions of "SJ16076"

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(Created page with "Category:gene == Gene SJ14191 == * transcription-direction: ** positive * right-end-position: ** 273437 * left-end-position: ** 242565 * centisome-position: ** 74.9092...")
(Created page with "Category:gene == Gene SJ11668 == * transcription-direction: ** negative * right-end-position: ** 165318 * left-end-position: ** 89669 * centisome-position: ** 11.505244...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ14191 ==
+
== Gene SJ11668 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 273437
+
** 165318
 
* left-end-position:
 
* left-end-position:
−
** 242565
+
** 89669
 
* centisome-position:
 
* centisome-position:
−
** 74.9092    
+
** 11.505244    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[1.1.1.39-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[RXN-10462]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13805]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-1381]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-15045]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[MALIC-NADP-RXN]]
+
* [[RXN-16024]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[OXALODECARB-RXN]]
+
* [[RXN-16117]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-17016]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-17017]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-17018]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY0-1319]]
−
* [[PWY-7118]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[TRIGLSYN-PWY]]
−
* [[GLUCONEO-PWY]]
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
* [[PWY-5667]]
−
* [[PWY-7115]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-7411]]
−
* [[PWY-7686]]
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
* [[PWY-7587]]
−
* [[PWY-3641]]
 
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7384]]
+
* [[PWY-6453]]
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7117]]
+
{{#set: transcription-direction=negative}}
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
{{#set: right-end-position=165318}}
−
* [[PWY-241]]
+
{{#set: left-end-position=89669}}
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
{{#set: centisome-position=11.505244   }}
−
* [[P184-PWY]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6339]]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[METHYLGALLATE-DEGRADATION-PWY]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=273437}}
 
−
{{#set: left-end-position=242565}}
 
−
{{#set: centisome-position=74.9092   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=11}}
+
{{#set: nb pathway associated=6}}

Revision as of 09:25, 27 August 2019

Gene SJ11668

  • transcription-direction:
    • negative
  • right-end-position:
    • 165318
  • left-end-position:
    • 89669
  • centisome-position:
    • 11.505244

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY0-1319
    • 4 reactions found over 4 reactions in the full pathway
  • TRIGLSYN-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5667
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7411
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7587
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6453
    • 3 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16076&oldid=29819"