Difference between revisions of "SJ16216"

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(Created page with "Category:gene == Gene SJ07746 == * transcription-direction: ** negative * right-end-position: ** 167907 * left-end-position: ** 108324 * centisome-position: ** 12.240982...")
(Created page with "Category:gene == Gene SJ16216 == * transcription-direction: ** positive * right-end-position: ** 216214 * left-end-position: ** 207656 * centisome-position: ** 72.567665...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ07746 ==
+
== Gene SJ16216 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 167907
+
** 216214
 
* left-end-position:
 
* left-end-position:
−
** 108324
+
** 207656
 
* centisome-position:
 
* centisome-position:
−
** 12.240982    
+
** 72.567665    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* [[ATPASE-RXN]]
 
* [[ATPASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[INORGPYROPHOSPHAT-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
 
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11135]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 42: Line 27:
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6797]]
+
* [[PWY-6545]]
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6147]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7539]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7805]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7807]]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
 
* [[PWY-7210]]
 
* [[PWY-7210]]
 
** '''8''' reactions found over '''8''' reactions in the full pathway
 
** '''8''' reactions found over '''8''' reactions in the full pathway
Line 60: Line 36:
 
* [[PWY-7184]]
 
* [[PWY-7184]]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6545]]
+
{{#set: transcription-direction=positive}}
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
{{#set: right-end-position=216214}}
−
{{#set: transcription-direction=negative}}
+
{{#set: left-end-position=207656}}
−
{{#set: right-end-position=167907}}
+
{{#set: centisome-position=72.567665   }}
−
{{#set: left-end-position=108324}}
 
−
{{#set: centisome-position=12.240982   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=9}}
+
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=9}}
+
{{#set: nb pathway associated=4}}

Latest revision as of 11:04, 18 March 2021

Gene SJ16216

  • transcription-direction:
    • positive
  • right-end-position:
    • 216214
  • left-end-position:
    • 207656
  • centisome-position:
    • 72.567665

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16216&oldid=133587"