Difference between revisions of "SJ16221"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CIT CIT] == * common-name: ** citrate * smiles: ** c(=o)([o-])cc(c(=o)[o-])(o)cc(=o)[o-] * inch...")
 
(Created page with "Category:gene == Gene SJ16221 == * transcription-direction: ** negative * right-end-position: ** 138830 * left-end-position: ** 133316 * centisome-position: ** 46.588737...")
 
(9 intermediate revisions by 4 users not shown)
Line 1: Line 1:
−
[[Category:metabolite]]
+
[[Category:gene]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CIT CIT] ==
+
== Gene SJ16221 ==
−
* common-name:
+
* transcription-direction:
−
** citrate
+
** negative
−
* smiles:
+
* right-end-position:
−
** c(=o)([o-])cc(c(=o)[o-])(o)cc(=o)[o-]
+
** 138830
−
* inchi-key:
+
* left-end-position:
−
** krknybchxyngox-uhfffaoysa-k
+
** 133316
−
* molecular-weight:
+
* centisome-position:
−
** 189.101
+
** 46.588737   
−
== Reaction(s) known to consume the compound ==
+
== Organism(s) associated with this gene  ==
−
* [[ACONITATEDEHYDR-RXN]]
+
* [[S.japonica_carotenoid_curated]]
−
* [[AKGCITtm]]
+
== Reaction(s) associated ==
−
* [[ATP-CITRATE-PRO-S--LYASE-RXN]]
+
* [[ATPASE-RXN]]
−
* [[ATPCL]]
+
** Category: [[annotation]]
−
* [[OAACITtm]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14047]]
+
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
* [[biomass_rxn]]
+
** Category: [[annotation]]
−
== Reaction(s) known to produce the compound ==
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ACONITATEDEHYDR-RXN]]
+
* [[RXN-11135]]
−
* [[AKGCITtm]]
+
** Category: [[annotation]]
−
* [[CITSYN-RXN]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[CSm]]
+
* [[RXN-12195]]
−
* [[OAACITtm]]
+
** Category: [[annotation]]
−
* [[RXN-14047]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
== Reaction(s) of unknown directionality ==
+
* [[RXN-12196]]
−
{{#set: common-name=citrate}}
+
** Category: [[annotation]]
−
{{#set: inchi-key=inchikey=krknybchxyngox-uhfffaoysa-k}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: molecular-weight=189.101}}
+
* [[RXN0-5462]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== Pathway(s) associated ==
 +
* [[PWY-6545]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7210]]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7184]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=138830}}
 +
{{#set: left-end-position=133316}}
 +
{{#set: centisome-position=46.588737    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=6}}
 +
{{#set: nb pathway associated=4}}

Latest revision as of 11:00, 18 March 2021

Gene SJ16221

  • transcription-direction:
    • negative
  • right-end-position:
    • 138830
  • left-end-position:
    • 133316
  • centisome-position:
    • 46.588737

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16221&oldid=131628"