Difference between revisions of "SJ16241"

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(Created page with "Category:gene == Gene SJ09475 == * transcription-direction: ** positive * right-end-position: ** 34938 * left-end-position: ** 17492 * centisome-position: ** 43.00113...")
(Created page with "Category:gene == Gene SJ16241 == * transcription-direction: ** positive * right-end-position: ** 394131 * left-end-position: ** 380681 * centisome-position: ** 55.19996...")
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ09475 ==
+
== Gene SJ16241 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 34938
+
** 394131
 
* left-end-position:
 
* left-end-position:
−
** 17492
+
** 380681
 
* centisome-position:
 
* centisome-position:
−
** 43.00113    
+
** 55.19996    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[orthology]]
+
* [[1.1.1.145-RXN]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[DTDPGLUCDEHYDRAT-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 27: Line 22:
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10740]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12693]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12747]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12789]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-18332]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-5482]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN66-342]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN66-350]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN66-353]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[UDP-GLUCOSE-46-DEHYDRATASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[GLYSYN-ALA-PWY]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
* [[PWY-6808]]
−
* [[PWY-6922]]
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-7657]]
−
* [[ARGININE-SYN4-PWY]]
+
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7104]]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6973]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6974]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6976]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6953]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7414]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7315]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7318]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6942]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7440]]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7814]]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-3221]]
 +
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-7413]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7312]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7316]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[DTDPRHAMSYN-PWY]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-3341]]
+
* [[PWY-7688]]
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6344]]
+
* [[PWY-7301]]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-4981]]
+
* [[PWY-3261]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6946]]
 +
** '''6''' reactions found over '''22''' reactions in the full pathway
 +
* [[PWY-6944]]
 +
** '''2''' reactions found over '''25''' reactions in the full pathway
 +
* [[PWY-6948]]
 +
** '''2''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY66-378]]
 
** '''3''' reactions found over '''6''' reactions in the full pathway
 
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[ARG-PRO-PWY]]
+
* [[PWY-7299]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[CITRULBIO-PWY]]
+
</div>
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[ARGASEDEG-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=34938}}
+
{{#set: right-end-position=394131}}
−
{{#set: left-end-position=17492}}
+
{{#set: left-end-position=380681}}
−
{{#set: centisome-position=43.00113   }}
+
{{#set: centisome-position=55.19996   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=12}}
−
{{#set: nb pathway associated=9}}
+
{{#set: nb pathway associated=26}}

Latest revision as of 11:06, 18 March 2021

Gene SJ16241

  • transcription-direction:
    • positive
  • right-end-position:
    • 394131
  • left-end-position:
    • 380681
  • centisome-position:
    • 55.19996

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6808
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7657
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7104
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6973
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6974
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6976
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6953
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7414
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7315
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7318
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6942
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7440
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7814
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-3221
    • 1 reactions found over n.a reactions in the full pathway
  • PWY-7413
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7312
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7316
    • 1 reactions found over 4 reactions in the full pathway
  • DTDPRHAMSYN-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7688
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7301
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-3261
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6946
    • 6 reactions found over 22 reactions in the full pathway
  • PWY-6944
    • 2 reactions found over 25 reactions in the full pathway
  • PWY-6948
    • 2 reactions found over 18 reactions in the full pathway
  • PWY66-378
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7299
    • 1 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16241&oldid=134527"