Difference between revisions of "SJ16244"
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(Created page with "Category:gene == Gene SJ03340 == * transcription-direction: ** negative * right-end-position: ** 88243 * left-end-position: ** 77265 * centisome-position: ** 63.167316...") |
(Created page with "Category:gene == Gene SJ16244 == * transcription-direction: ** positive * right-end-position: ** 420284 * left-end-position: ** 403709 * centisome-position: ** 58.539093...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ16244 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 420284 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 403709 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 58.539093 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | + | * [[3.1.4.11-RXN]] | |
| − | * [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[RXN | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PHOSPHOLIPASE-C-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[RXN- | + | * [[RXN-13334]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[RXN- | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-16261]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-6351]] |
| − | ** ''' | + | ** '''4''' reactions found over '''5''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7039]] |
| − | ** ''' | + | ** '''4''' reactions found over '''5''' reactions in the full pathway |
| − | * [[PWY | + | * [[LIPASYN-PWY]] |
| − | + | ** '''5''' reactions found over '''5''' reactions in the full pathway | |
| − | + | * [[PWY-6367]] | |
| − | ** ''' | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
| − | * [[PWY- | + | {{#set: transcription-direction=positive}} |
| − | ** ''' | + | {{#set: right-end-position=420284}} |
| − | {{#set: transcription-direction= | + | {{#set: left-end-position=403709}} |
| − | {{#set: right-end-position= | + | {{#set: centisome-position=58.539093 }} |
| − | {{#set: left-end-position= | ||
| − | {{#set: centisome-position= | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
Revision as of 11:08, 15 January 2021
Contents
Gene SJ16244
- transcription-direction:
- positive
- right-end-position:
- 420284
- left-end-position:
- 403709
- centisome-position:
- 58.539093
Organism(s) associated with this gene
Reaction(s) associated
- 3.1.4.11-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PHOSPHOLIPASE-C-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13334
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-16261
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6351
- 4 reactions found over 5 reactions in the full pathway
- PWY-7039
- 4 reactions found over 5 reactions in the full pathway
- LIPASYN-PWY
- 5 reactions found over 5 reactions in the full pathway
- PWY-6367
- 2 reactions found over 4 reactions in the full pathway
