Difference between revisions of "SJ16290"

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(Created page with "Category:gene == Gene SJ14193 == * transcription-direction: ** negative * right-end-position: ** 37560 * left-end-position: ** 25474 * centisome-position: ** 7.86691 =...")
(Created page with "Category:gene == Gene SJ22527 == * transcription-direction: ** positive * right-end-position: ** 131307 * left-end-position: ** 122007 * centisome-position: ** 69.65142...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ14193 ==
+
== Gene SJ22527 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 37560
+
** 131307
 
* left-end-position:
 
* left-end-position:
−
** 25474
+
** 122007
 
* centisome-position:
 
* centisome-position:
−
** 7.86691    
+
** 69.65142    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3.2.1.21-RXN]]
+
* [[6.3.5.6-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[6.3.5.7-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[AMIDASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[GLUTAMINE--TRNA-LIGASE-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[3.2.1.23-RXN]]
+
* [[GUANIDINOBUTANAMIDE-NH3-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[PYRAZIN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[BETAGALACTOSID-RXN]]
+
* [[R311-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[KETOLACTOSE-RXN]]
+
* [[RXN-14727]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10769]]
+
* [[RXN-14728]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10773]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12398]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12399]]
+
* [[RXN-17608]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12400]]
+
* [[RXNN-404]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13600]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13602]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13603]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14179]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-5341]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-8036]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9674]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY490-4]]
−
* [[BGALACT-PWY]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
* [[PWY-5921]]
−
* [[LACTOSEUTIL-PWY]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[TRNA-CHARGING-PWY]]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
* [[ARGDEG-V-PWY]]
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6788]]
+
* [[PWY-7308]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6807]]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7089]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7091]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7092]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-3121]]
 
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5176]]
+
* [[PWY-5025]]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6002]]
 
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
</div>
+
* [[PWY-3161]]
−
{{#set: transcription-direction=negative}}
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
{{#set: right-end-position=37560}}
+
* [[PWY-581]]
−
{{#set: left-end-position=25474}}
+
** '''5''' reactions found over '''12''' reactions in the full pathway
−
{{#set: centisome-position=7.86691   }}
+
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=131307}}
 +
{{#set: left-end-position=122007}}
 +
{{#set: centisome-position=69.65142   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=16}}
+
{{#set: nb reaction associated=11}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=8}}

Revision as of 15:17, 5 January 2021

Gene SJ22527

  • transcription-direction:
    • positive
  • right-end-position:
    • 131307
  • left-end-position:
    • 122007
  • centisome-position:
    • 69.65142

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY490-4
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5921
    • 2 reactions found over 4 reactions in the full pathway
  • TRNA-CHARGING-PWY
    • 21 reactions found over 21 reactions in the full pathway
  • ARGDEG-V-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7308
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5025
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-3161
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-581
    • 5 reactions found over 12 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16290&oldid=68013"