Difference between revisions of "SJ16420"

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(Created page with "Category:gene == Gene SJ05258 == * transcription-direction: ** negative * right-end-position: ** 481707 * left-end-position: ** 469958 * centisome-position: ** 94.21734...")
(Created page with "Category:gene == Gene SJ16420 == * transcription-direction: ** negative * right-end-position: ** 323330 * left-end-position: ** 316252 * centisome-position: ** 45.980965...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05258 ==
+
== Gene SJ16420 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 481707
+
** 323330
 
* left-end-position:
 
* left-end-position:
−
** 469958
+
** 316252
 
* centisome-position:
 
* centisome-position:
−
** 94.21734    
+
** 45.980965    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[2.4.1.67-RXN]]
+
* [[CYTOCHROME-C-PEROXIDASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[PEROXID-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[2.4.1.82-RXN]]
+
* [[RXN-12440]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ALPHAGALACTOSID-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14240]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-11501]]
+
* [[RXN-15288]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-11502]]
+
* [[RXN-17352]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12088]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-3521]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-17830]]
+
* [[RXN-8635]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-5337]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-6959]]
−
* [[PWY-6524]]
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6960]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6961]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7214]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7445]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5466]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6824]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5469]]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-2261]]
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6525]]
+
* [[PWY-5461]]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY0-1301]]
 
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6527]]
+
</div>
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=481707}}
+
{{#set: right-end-position=323330}}
−
{{#set: left-end-position=469958}}
+
{{#set: left-end-position=316252}}
−
{{#set: centisome-position=94.21734   }}
+
{{#set: centisome-position=45.980965   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=8}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=10}}

Latest revision as of 11:01, 18 March 2021

Gene SJ16420

  • transcription-direction:
    • negative
  • right-end-position:
    • 323330
  • left-end-position:
    • 316252
  • centisome-position:
    • 45.980965

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6959
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6960
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6961
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7214
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7445
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5466
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-6824
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-5469
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-2261
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5461
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16420&oldid=132157"