Difference between revisions of "SJ16458"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ20192 == * transcription-direction: ** negative * right-end-position: ** 184025 * left-end-position: ** 169109 * centisome-position: ** 80.03265...") |
(Created page with "Category:gene == Gene SJ20639 == * transcription-direction: ** positive * right-end-position: ** 389712 * left-end-position: ** 377072 * centisome-position: ** 61.156994...") |
||
| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ20639 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 389712 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 377072 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 61.156994 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[ARGSUCCINLYA-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
| − | + | * [[RXN-22]] | |
| − | *** source: [[ | ||
| − | |||
| − | |||
| − | *** source: [[ | ||
| − | * [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[ARGSYN-PWY]] |
| − | ** ''' | + | ** '''5''' reactions found over '''4''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-4983]] |
| − | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7400]] |
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-4984]] | ||
| + | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[ARGSYNBSUB-PWY]] | ||
** '''9''' reactions found over '''9''' reactions in the full pathway | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
| − | * [[PWY- | + | * [[PWY-5154]] |
** '''8''' reactions found over '''9''' reactions in the full pathway | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
| − | {{#set: transcription-direction= | + | * [[PWY-5]] |
| − | {{#set: right-end-position= | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | {{#set: transcription-direction=positive}} |
| − | {{#set: centisome-position= | + | {{#set: right-end-position=389712}} |
| + | {{#set: left-end-position=377072}} | ||
| + | {{#set: centisome-position=61.156994 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Revision as of 14:21, 26 August 2019
Contents
Gene SJ20639
- transcription-direction:
- positive
- right-end-position:
- 389712
- left-end-position:
- 377072
- centisome-position:
- 61.156994
Organism(s) associated with this gene
Reaction(s) associated
- ARGSUCCINLYA-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-22
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- ARGSYN-PWY
- 5 reactions found over 4 reactions in the full pathway
- PWY-4983
- 3 reactions found over 3 reactions in the full pathway
- PWY-7400
- 7 reactions found over 9 reactions in the full pathway
- PWY-4984
- 5 reactions found over 5 reactions in the full pathway
- ARGSYNBSUB-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-5154
- 8 reactions found over 9 reactions in the full pathway
- PWY-5
- 3 reactions found over 4 reactions in the full pathway
