Difference between revisions of "SJ16470"
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(Created page with "Category:gene == Gene SJ07451 == * transcription-direction: ** negative * right-end-position: ** 192711 * left-end-position: ** 166946 * centisome-position: ** 36.661697...") |
(Created page with "Category:gene == Gene SJ15410 == * transcription-direction: ** positive * right-end-position: ** 266676 * left-end-position: ** 262574 * centisome-position: ** 88.59848...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ15410 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 266676 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 262574 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 88.59848 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | + | * [[GPPSYN-RXN]] | |
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− | * [[ | ||
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-4303]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-4305]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[RXN0-6274]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
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== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[PWY-6383]] |
− | ** ''' | + | ** '''2''' reactions found over '''5''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7410]] |
− | ** ''' | + | ** '''1''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7102]] |
− | ** ''' | + | ** '''3''' reactions found over '''6''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6859]] |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7736]] |
− | ** ''' | + | ** '''3''' reactions found over '''8''' reactions in the full pathway |
− | + | * [[PWY-5122]] | |
− | + | ** '''1''' reactions found over '''1''' reactions in the full pathway | |
− | * [[PWY- | + | * [[PWY-7141]] |
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7659]] |
− | ** ''' | + | ** '''1''' reactions found over '''9''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7709]] |
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5123]] |
− | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7182]] |
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-2681]] |
− | ** ''' | + | ** '''4''' reactions found over '''11''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-2781]] |
− | ** ''' | + | ** '''1''' reactions found over '''5''' reactions in the full pathway |
− | * [[PWY- | ||
− | ** ''' | ||
</div> | </div> | ||
− | {{#set: transcription-direction= | + | {{#set: transcription-direction=positive}} |
− | {{#set: right-end-position= | + | {{#set: right-end-position=266676}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=262574}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=88.59848 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=13}} |
Revision as of 09:26, 27 August 2019
Contents
Gene SJ15410
- transcription-direction:
- positive
- right-end-position:
- 266676
- left-end-position:
- 262574
- centisome-position:
- 88.59848
Organism(s) associated with this gene
Reaction(s) associated
- GPPSYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-4303
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-4305
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN0-6274
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6383
- 2 reactions found over 5 reactions in the full pathway
- PWY-7410
- 1 reactions found over 4 reactions in the full pathway
- PWY-7102
- 3 reactions found over 6 reactions in the full pathway
- PWY-6859
- 3 reactions found over 4 reactions in the full pathway
- PWY-7736
- 3 reactions found over 8 reactions in the full pathway
- PWY-5122
- 1 reactions found over 1 reactions in the full pathway
- PWY-7141
- 1 reactions found over 2 reactions in the full pathway
- PWY-7659
- 1 reactions found over 9 reactions in the full pathway
- PWY-7709
- 1 reactions found over 2 reactions in the full pathway
- PWY-5123
- 3 reactions found over 3 reactions in the full pathway
- PWY-7182
- 1 reactions found over 2 reactions in the full pathway
- PWY-2681
- 4 reactions found over 11 reactions in the full pathway
- PWY-2781
- 1 reactions found over 5 reactions in the full pathway