Difference between revisions of "SJ16883"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-659 CPD-659] == * common-name: ** l-arogenate * smiles: ** c(c(cc1(c=cc(c=c1)o)c([o-])=o)[n...")
(Created page with "Category:gene == Gene SJ16883 == * transcription-direction: ** positive * right-end-position: ** 252893 * left-end-position: ** 246796 * centisome-position: ** 89.51484...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-659 CPD-659] ==
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== Gene SJ16883 ==
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* common-name:
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* transcription-direction:
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** l-arogenate
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** positive
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* smiles:
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* right-end-position:
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** c(c(cc1(c=cc(c=c1)o)c([o-])=o)[n+])([o-])=o
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** 252893
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* inchi-key:
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* left-end-position:
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** mieildywganznh-dsquftabsa-m
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** 246796
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* molecular-weight:
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* centisome-position:
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** 226.208
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** 89.51484   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[PREPHENATE-ASP-TRANSAMINE-RXN]]
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* [[S.japonica_carotenoid_curated]]
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* [[PREPHENATE-TRANSAMINE-RXN]]
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== Reaction(s) associated ==
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* [[RXN-5682]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) known to produce the compound ==
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* [[GSHTRAN-RXN]]
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* [[PREPHENATE-ASP-TRANSAMINE-RXN]]
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** Category: [[annotation]]
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* [[PREPHENATE-TRANSAMINE-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reaction(s) of unknown directionality ==
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** Category: [[orthology]]
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{{#set: common-name=l-arogenate}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: inchi-key=inchikey=mieildywganznh-dsquftabsa-m}}
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* [[GST-RXN]]
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{{#set: molecular-weight=226.208}}
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[PROSTAGLANDIN-D-SYNTHASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-13673]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-15680]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-6842]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4061]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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* [[PWY66-374]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7112]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7533]]
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** '''3''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=252893}}
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{{#set: left-end-position=246796}}
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{{#set: centisome-position=89.51484    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=5}}
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{{#set: nb pathway associated=5}}

Latest revision as of 11:02, 18 March 2021

Gene SJ16883

  • transcription-direction:
    • positive
  • right-end-position:
    • 252893
  • left-end-position:
    • 246796
  • centisome-position:
    • 89.51484

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6842
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-4061
    • 4 reactions found over 8 reactions in the full pathway
  • PWY66-374
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7112
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7533
    • 3 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16883&oldid=132411"