Difference between revisions of "SJ16914"
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(Created page with "Category:gene == Gene SJ17344 == * transcription-direction: ** negative * right-end-position: ** 126741 * left-end-position: ** 122789 * centisome-position: ** 46.65555...") |
(Created page with "Category:gene == Gene SJ15062 == * transcription-direction: ** positive * right-end-position: ** 67825 * left-end-position: ** 54639 * centisome-position: ** 18.02066...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ15062 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 67825 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 54639 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 18.02066 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[6PGLUCONDEHYDROG-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[PYRROLINECARBREDUCT-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
| − | {{#set: right-end-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: left-end-position= | + | * [[RXN-9952]] |
| − | {{#set: centisome-position= | + | ** Category: [[annotation]] |
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[RXN66-546]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | * [[P122-PWY]] | ||
| + | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
| + | * [[PWY-3341]] | ||
| + | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PROSYN-PWY]] | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY-6344]] | ||
| + | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-4981]] | ||
| + | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[ARG-PRO-PWY]] | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[OXIDATIVEPENT-PWY]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=67825}} | ||
| + | {{#set: left-end-position=54639}} | ||
| + | {{#set: centisome-position=18.02066 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| + | {{#set: nb pathway associated=7}} | ||
Revision as of 09:26, 27 August 2019
Contents
Gene SJ15062
- transcription-direction:
- positive
- right-end-position:
- 67825
- left-end-position:
- 54639
- centisome-position:
- 18.02066
Organism(s) associated with this gene
Reaction(s) associated
- 6PGLUCONDEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- PYRROLINECARBREDUCT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-9952
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-546
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-3341
- 4 reactions found over 5 reactions in the full pathway
- PROSYN-PWY
- 3 reactions found over 4 reactions in the full pathway
- PWY-6344
- 2 reactions found over 9 reactions in the full pathway
- PWY-4981
- 3 reactions found over 6 reactions in the full pathway
- ARG-PRO-PWY
- 3 reactions found over 4 reactions in the full pathway
- OXIDATIVEPENT-PWY
- 3 reactions found over 3 reactions in the full pathway
