Difference between revisions of "SJ16950"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ20234 == * transcription-direction: ** positive * right-end-position: ** 123838 * left-end-position: ** 113401 * centisome-position: ** 53.83078...")
(Created page with "Category:gene == Gene SJ16950 == * transcription-direction: ** negative * right-end-position: ** 521708 * left-end-position: ** 506485 * centisome-position: ** 74.264336...")
 
(2 intermediate revisions by one other user not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ20234 ==
+
== Gene SJ16950 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 123838
+
** 521708
 
* left-end-position:
 
* left-end-position:
−
** 113401
+
** 506485
 
* centisome-position:
 
* centisome-position:
−
** 53.83078    
+
** 74.264336    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[HOLOCYTOCHROME-C-SYNTHASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[F16BDEPHOS-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
{{#set: transcription-direction=positive}}
+
* [[SUGAR-PHOSPHATASE-RXN]]
−
{{#set: right-end-position=123838}}
+
** Category: [[annotation]]
−
{{#set: left-end-position=113401}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: centisome-position=53.83078   }}
+
</div>
 +
== Pathway(s) associated ==
 +
* [[CALVIN-PWY]]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5484]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P185-PWY]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY66-399]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[SUCSYN-PWY]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=521708}}
 +
{{#set: left-end-position=506485}}
 +
{{#set: centisome-position=74.264336   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=4}}
 +
{{#set: nb pathway associated=7}}

Latest revision as of 11:05, 18 March 2021

Gene SJ16950

  • transcription-direction:
    • negative
  • right-end-position:
    • 521708
  • left-end-position:
    • 506485
  • centisome-position:
    • 74.264336

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16950&oldid=133965"