Difference between revisions of "SJ17025"
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(Created page with "Category:gene == Gene SJ06001 == * transcription-direction: ** positive * right-end-position: ** 234461 * left-end-position: ** 206764 * centisome-position: ** 42.809345...") |
(Created page with "Category:gene == Gene SJ12265 == * transcription-direction: ** negative * right-end-position: ** 194327 * left-end-position: ** 190320 * centisome-position: ** 52.847874...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ12265 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 194327 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 190320 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 52.847874 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
| − | * [[S. | + | * [[S.japonica_carotenoid_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[RXN-4144]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN11878]] | ||
| + | ** Category: [[manual]] | ||
| + | *** source: [[reaction_creator_sjap]]; tool: [[unknown-tool]]; comment: curation sterols (girard et al.) | ||
| + | * [[RXN66-14]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN66-306]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
| − | {{#set: right-end-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: left-end-position= | + | </div> |
| − | {{#set: centisome-position= | + | == Pathway(s) associated == |
| − | {{#set: organism associated=S. | + | * [[PWY-2541]] |
| − | {{#set: nb reaction associated= | + | ** '''11''' reactions found over '''35''' reactions in the full pathway |
| + | * [[PWY-8191]] | ||
| + | ** '''15''' reactions found over '''n.a''' reactions in the full pathway | ||
| + | * [[PWY66-3]] | ||
| + | ** '''12''' reactions found over '''18''' reactions in the full pathway | ||
| + | * [[PWY66-4]] | ||
| + | ** '''14''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY-6074]] | ||
| + | ** '''6''' reactions found over '''14''' reactions in the full pathway | ||
| + | * [[PWY66-341]] | ||
| + | ** '''14''' reactions found over '''18''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=194327}} | ||
| + | {{#set: left-end-position=190320}} | ||
| + | {{#set: centisome-position=52.847874 }} | ||
| + | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| + | {{#set: nb reaction associated=4}} | ||
| + | {{#set: nb pathway associated=6}} | ||
Revision as of 14:52, 5 January 2021
Contents
Gene SJ12265
- transcription-direction:
- negative
- right-end-position:
- 194327
- left-end-position:
- 190320
- centisome-position:
- 52.847874
Organism(s) associated with this gene
Reaction(s) associated
- RXN-4144
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN11878
- Category: manual
- source: reaction_creator_sjap; tool: unknown-tool; comment: curation sterols (girard et al.)
- Category: manual
- RXN66-14
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN66-306
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-2541
- 11 reactions found over 35 reactions in the full pathway
- PWY-8191
- 15 reactions found over n.a reactions in the full pathway
- PWY66-3
- 12 reactions found over 18 reactions in the full pathway
- PWY66-4
- 14 reactions found over 4 reactions in the full pathway
- PWY-6074
- 6 reactions found over 14 reactions in the full pathway
- PWY66-341
- 14 reactions found over 18 reactions in the full pathway
