Difference between revisions of "SJ17249"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Basic-Amino-Acids Basic-Amino-Acids] == * common-name: ** a basic amino acid == Reaction(s) kno...")
(Created page with "Category:gene == Gene SJ17249 == * transcription-direction: ** negative * right-end-position: ** 48135 * left-end-position: ** 36987 * centisome-position: ** 5.460738...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Basic-Amino-Acids Basic-Amino-Acids] ==
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== Gene SJ17249 ==
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* common-name:
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* transcription-direction:
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** a basic amino acid
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** negative
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== Reaction(s) known to consume the compound ==
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* right-end-position:
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== Reaction(s) known to produce the compound ==
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** 48135
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* [[3.4.16.6-RXN]]
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* left-end-position:
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* [[3.4.17.22-RXN]]
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** 36987
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== Reaction(s) of unknown directionality ==
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* centisome-position:
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{{#set: common-name=a basic amino acid}}
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** 5.460738   
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== Organism(s) associated with this gene  ==
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[1.2.1.18-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[1.2.1.27-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[ALDHDEHYDROG-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[R222-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-10089]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-10715]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-10780]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-10912]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-10917]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11213]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14224]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14225]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14280]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-16653]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-16654]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-16655]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-16656]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-17808]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-2902]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-3443]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-37]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-4142]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9758]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9958]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN66-3]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN66-472]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN66-476]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN66-479]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN6666-5]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-5642]]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7269]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[P221-PWY]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6181]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6307]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6313]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6342]]
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** '''8''' reactions found over '''13''' reactions in the full pathway
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* [[VALDEG-PWY]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[BETA-ALA-DEGRADATION-I-PWY]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7574]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[P562-PWY]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-1781]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-2221]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-0]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-2724]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-2501]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6054]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6055]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6373]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7387]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY66-21]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY66-162]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY66-161]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY66-387]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY66-388]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY66-389]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY6666-2]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7431]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=48135}}
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{{#set: left-end-position=36987}}
 +
{{#set: centisome-position=5.460738    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=29}}
 +
{{#set: nb pathway associated=28}}

Latest revision as of 11:04, 18 March 2021

Gene SJ17249

  • transcription-direction:
    • negative
  • right-end-position:
    • 48135
  • left-end-position:
    • 36987
  • centisome-position:
    • 5.460738

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5642
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7269
    • 5 reactions found over 5 reactions in the full pathway
  • P221-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6181
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6307
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6313
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6342
    • 8 reactions found over 13 reactions in the full pathway
  • VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway
  • BETA-ALA-DEGRADATION-I-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7574
    • 3 reactions found over 5 reactions in the full pathway
  • P562-PWY
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-1781
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-2221
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-0
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-2724
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-2501
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6054
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6055
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6373
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7387
    • 1 reactions found over 3 reactions in the full pathway
  • PWY66-21
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-162
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-161
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-387
    • 4 reactions found over 6 reactions in the full pathway
  • PWY66-388
    • 2 reactions found over 7 reactions in the full pathway
  • PWY66-389
    • 4 reactions found over 4 reactions in the full pathway
  • PWY6666-2
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7431
    • 3 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ17249&oldid=133470"