Difference between revisions of "SJ17324"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11521 CPD-11521] == * common-name: ** 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-coa...")
(Created page with "Category:gene == Gene SJ17324 == * transcription-direction: ** negative * right-end-position: ** 260837 * left-end-position: ** 248551 * centisome-position: ** 94.113884...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11521 CPD-11521] ==
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== Gene SJ17324 ==
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* common-name:
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* transcription-direction:
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** 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-coa
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** negative
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* smiles:
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* right-end-position:
−
** ccc=ccc1(c(ccc(=o)1)cccccc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ2(c(op([o-])(=o)[o-])c(o)c(o2)n4(c3(=c(c(n)=nc=n3)n=c4))))[o-])[o-])=o)
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** 260837
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* inchi-key:
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* left-end-position:
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** vwfuyqvgvaevnh-wzglbkmisa-j
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** 248551
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* molecular-weight:
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* centisome-position:
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** 1011.867
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** 94.113884   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-10706]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[RXN-10699]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[RXN-12587]]
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{{#set: common-name=3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-coa}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=vwfuyqvgvaevnh-wzglbkmisa-j}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=1011.867}}
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-12588]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14382]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14384]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14385]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14386]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-15881]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9787]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-308]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[SELENOCYSTEINE-LYASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-6892]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7250]]
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** '''5''' reactions found over '''10''' reactions in the full pathway
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* [[PWY0-1021]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7892]]
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** '''3''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6891]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7904]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7891]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7889]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7888]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6823]]
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** '''7''' reactions found over '''6''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=260837}}
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{{#set: left-end-position=248551}}
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{{#set: centisome-position=94.113884    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=10}}
 +
{{#set: nb pathway associated=10}}

Latest revision as of 11:03, 18 March 2021

Gene SJ17324

  • transcription-direction:
    • negative
  • right-end-position:
    • 260837
  • left-end-position:
    • 248551
  • centisome-position:
    • 94.113884

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6892
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7250
    • 5 reactions found over 10 reactions in the full pathway
  • PWY0-1021
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7892
    • 3 reactions found over 11 reactions in the full pathway
  • PWY-6891
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7904
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7891
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7889
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7888
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6823
    • 7 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ17324&oldid=133162"