Difference between revisions of "SJ17385"
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(Created page with "Category:gene == Gene SJ13516 == * transcription-direction: ** positive * right-end-position: ** 304276 * left-end-position: ** 239443 * centisome-position: ** 71.56118...") |
(Created page with "Category:gene == Gene SJ19480 == * transcription-direction: ** negative * right-end-position: ** 27974 * left-end-position: ** 21016 * centisome-position: ** 9.269624...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ19480 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 27974 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 21016 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 9.269624 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[ARG-OXIDATION-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | {{#set: transcription-direction= | + | * [[L-AMINO-ACID-OXIDASE-RXN]] |
− | {{#set: right-end-position= | + | ** Category: [[annotation]] |
− | {{#set: left-end-position= | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
− | {{#set: centisome-position= | + | * [[L-ASPARTATE-OXID-RXN]] |
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14971]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-15378]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-17130]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-9772]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
+ | == Pathway(s) associated == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[ARGDEG-IV-PWY]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PYRIDNUCSYN-PWY]] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5316]] | ||
+ | ** '''3''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7342]] | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5690]] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P105-PWY]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[TCA]] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7254]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-561]] | ||
+ | ** '''6''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6728]] | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY-3781]] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7279]] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY66-398]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-4302]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY0-1329]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY0-1353]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=27974}} | ||
+ | {{#set: left-end-position=21016}} | ||
+ | {{#set: centisome-position=9.269624 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=8}} |
+ | {{#set: nb pathway associated=17}} |
Revision as of 14:20, 26 August 2019
Contents
Gene SJ19480
- transcription-direction:
- negative
- right-end-position:
- 27974
- left-end-position:
- 21016
- centisome-position:
- 9.269624
Organism(s) associated with this gene
Reaction(s) associated
- ARG-OXIDATION-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- L-AMINO-ACID-OXIDASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- L-ASPARTATE-OXID-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-14971
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-15378
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-17130
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9772
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- ARGDEG-IV-PWY
- 1 reactions found over 4 reactions in the full pathway
- PYRIDNUCSYN-PWY
- 6 reactions found over 6 reactions in the full pathway
- PWY-5316
- 3 reactions found over 9 reactions in the full pathway
- PWY-7342
- 4 reactions found over 9 reactions in the full pathway
- PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- PWY-5690
- 8 reactions found over 9 reactions in the full pathway
- P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- TCA
- 9 reactions found over 10 reactions in the full pathway
- PWY-7254
- 7 reactions found over 9 reactions in the full pathway
- PWY-561
- 6 reactions found over 4 reactions in the full pathway
- PWY-6728
- 11 reactions found over 19 reactions in the full pathway
- PWY-3781
- 4 reactions found over 4 reactions in the full pathway
- PWY-7279
- 4 reactions found over 4 reactions in the full pathway
- PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-4302
- 3 reactions found over 3 reactions in the full pathway
- PWY0-1329
- 1 reactions found over 2 reactions in the full pathway
- PWY0-1353
- 1 reactions found over 2 reactions in the full pathway