Difference between revisions of "SJ17479"
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(Created page with "Category:gene == Gene SJ00619 == * transcription-direction: ** positive * right-end-position: ** 521392 * left-end-position: ** 515275 * centisome-position: ** 91.12025...") |
(Created page with "Category:gene == Gene SJ15126 == * transcription-direction: ** negative * right-end-position: ** 140593 * left-end-position: ** 132646 * centisome-position: ** 44.06112...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ15126 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 140593 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 132646 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 44.06112 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[RXN | + | * [[ADENPRIBOSYLTRAN-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[RXN | + | ** Category: [[orthology]] |
| − | ** Category: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | * [[ | + | * [[APPRT]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[GUANPRIBOSYLTRAN-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-14270]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-7807]] |
| − | ** '''2''' reactions found over ''' | + | ** '''2''' reactions found over '''7''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-6610]] |
| − | ** '''3''' reactions found over ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-7805]] |
| − | {{#set: right-end-position= | + | ** '''2''' reactions found over '''8''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-6605]] |
| − | {{#set: centisome-position= | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
| + | * [[P121-PWY]] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-6599]] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-6620]] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=140593}} | ||
| + | {{#set: left-end-position=132646}} | ||
| + | {{#set: centisome-position=44.06112 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Revision as of 18:42, 14 January 2021
Contents
Gene SJ15126
- transcription-direction:
- negative
- right-end-position:
- 140593
- left-end-position:
- 132646
- centisome-position:
- 44.06112
Organism(s) associated with this gene
Reaction(s) associated
- ADENPRIBOSYLTRAN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- APPRT
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- GUANPRIBOSYLTRAN-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14270
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7807
- 2 reactions found over 7 reactions in the full pathway
- PWY-6610
- 2 reactions found over 3 reactions in the full pathway
- PWY-7805
- 2 reactions found over 8 reactions in the full pathway
- PWY-6605
- 1 reactions found over 2 reactions in the full pathway
- P121-PWY
- 2 reactions found over 2 reactions in the full pathway
- PWY-6599
- 2 reactions found over 2 reactions in the full pathway
- PWY-6620
- 2 reactions found over 2 reactions in the full pathway
