Difference between revisions of "SJ17982"

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(Created page with "Category:gene == Gene SJ09945 == * transcription-direction: ** positive * right-end-position: ** 244797 * left-end-position: ** 217669 * centisome-position: ** 54.161472...")
(Created page with "Category:gene == Gene SJ17982 == * transcription-direction: ** negative * right-end-position: ** 101434 * left-end-position: ** 87240 * centisome-position: ** 34.433624...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ09945 ==
+
== Gene SJ17982 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 244797
+
** 101434
 
* left-end-position:
 
* left-end-position:
−
** 217669
+
** 87240
 
* centisome-position:
 
* centisome-position:
−
** 54.161472    
+
** 34.433624    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[2.5.1.58-RXN]]
−
* [[2.5.1.41-RXN]]
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[CYCLOARTENOL-SYNTHASE-RXN]]
+
* [[FARNESYLTRANSTRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[FPPSYN-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* [[GPPSYN-RXN]]
 
* [[GPPSYN-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[LANOSTEROL-SYNTHASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-7810]]
+
* [[RXN-17573]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7811]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-7813]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-6349]]
+
* [[PWY-7492]]
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6115]]
 
−
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[PWY-7154]]
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7155]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6098]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-2541]]
 
−
** '''11''' reactions found over '''35''' reactions in the full pathway
 
−
* [[PWY-6109]]
 
 
** '''1''' reactions found over '''6''' reactions in the full pathway
 
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6859]]
+
* [[PWY-6659]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7517]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6691]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7721]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-7736]]
 
* [[PWY-7736]]
 
** '''3''' reactions found over '''8''' reactions in the full pathway
 
** '''3''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7102]]
+
* [[PWY-5120]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7721]]
+
* [[PWY-7720]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5123]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
* [[PWY-6383]]
 
* [[PWY-6383]]
 
** '''2''' reactions found over '''5''' reactions in the full pathway
 
** '''2''' reactions found over '''5''' reactions in the full pathway
 
* [[PWY-7410]]
 
* [[PWY-7410]]
 
** '''1''' reactions found over '''4''' reactions in the full pathway
 
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7102]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6859]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-5122]]
 
* [[PWY-5122]]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
Line 80: Line 62:
 
* [[PWY-7709]]
 
* [[PWY-7709]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5123]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-7182]]
 
* [[PWY-7182]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6132]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5808]]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5132]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5133]]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
 
</div>
 
</div>
−
{{#set: transcription-direction=positive}}
+
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=244797}}
+
{{#set: right-end-position=101434}}
−
{{#set: left-end-position=217669}}
+
{{#set: left-end-position=87240}}
−
{{#set: centisome-position=54.161472   }}
+
{{#set: centisome-position=34.433624   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=8}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=23}}
+
{{#set: nb pathway associated=18}}

Latest revision as of 11:04, 18 March 2021

Gene SJ17982

  • transcription-direction:
    • negative
  • right-end-position:
    • 101434
  • left-end-position:
    • 87240
  • centisome-position:
    • 34.433624

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7492
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6659
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7517
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6691
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5120
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7720
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway




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