Difference between revisions of "SJ17982"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ14895 == * transcription-direction: ** negative * right-end-position: ** 97546 * left-end-position: ** 91852 * centisome-position: ** 30.009832...") |
(Created page with "Category:gene == Gene SJ09945 == * transcription-direction: ** positive * right-end-position: ** 244797 * left-end-position: ** 217669 * centisome-position: ** 54.161472...") |
||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ09945 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 244797 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 217669 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 54.161472 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[2. | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[2.5.1.41-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[CYCLOARTENOL-SYNTHASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[FPPSYN-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[GPPSYN-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[LANOSTEROL-SYNTHASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[RXN-7810]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[RXN-7811]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[RXN-7813]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''4''' reactions found over '''3''' reactions in the full pathway | + | * [[PWY-6349]] |
− | {{#set: transcription-direction= | + | ** '''2''' reactions found over '''6''' reactions in the full pathway |
− | {{#set: right-end-position= | + | * [[PWY-6115]] |
− | {{#set: left-end-position= | + | ** '''1''' reactions found over '''n.a''' reactions in the full pathway |
− | {{#set: centisome-position= | + | * [[PWY-7154]] |
+ | ** '''2''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7155]] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6098]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-2541]] | ||
+ | ** '''11''' reactions found over '''35''' reactions in the full pathway | ||
+ | * [[PWY-6109]] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6859]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7736]] | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7102]] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7721]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5123]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6383]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7410]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5122]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-7141]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7659]] | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7709]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7182]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6132]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-5808]] | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5132]] | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5133]] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=positive}} | ||
+ | {{#set: right-end-position=244797}} | ||
+ | {{#set: left-end-position=217669}} | ||
+ | {{#set: centisome-position=54.161472 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=8}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=23}} |
Revision as of 08:17, 15 March 2021
Contents
Gene SJ09945
- transcription-direction:
- positive
- right-end-position:
- 244797
- left-end-position:
- 217669
- centisome-position:
- 54.161472
Organism(s) associated with this gene
Reaction(s) associated
- 2.5.1.41-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- CYCLOARTENOL-SYNTHASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- FPPSYN-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- GPPSYN-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- LANOSTEROL-SYNTHASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7810
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7811
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7813
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-6349
- 2 reactions found over 6 reactions in the full pathway
- PWY-6115
- 1 reactions found over n.a reactions in the full pathway
- PWY-7154
- 2 reactions found over 11 reactions in the full pathway
- PWY-7155
- 4 reactions found over 6 reactions in the full pathway
- PWY-6098
- 2 reactions found over 2 reactions in the full pathway
- PWY-2541
- 11 reactions found over 35 reactions in the full pathway
- PWY-6109
- 1 reactions found over 6 reactions in the full pathway
- PWY-6859
- 3 reactions found over 4 reactions in the full pathway
- PWY-7736
- 3 reactions found over 8 reactions in the full pathway
- PWY-7102
- 3 reactions found over 6 reactions in the full pathway
- PWY-7721
- 2 reactions found over 4 reactions in the full pathway
- PWY-5123
- 3 reactions found over 3 reactions in the full pathway
- PWY-6383
- 2 reactions found over 5 reactions in the full pathway
- PWY-7410
- 1 reactions found over 4 reactions in the full pathway
- PWY-5122
- 1 reactions found over 1 reactions in the full pathway
- PWY-7141
- 1 reactions found over 2 reactions in the full pathway
- PWY-7659
- 1 reactions found over 9 reactions in the full pathway
- PWY-7709
- 1 reactions found over 2 reactions in the full pathway
- PWY-7182
- 1 reactions found over 2 reactions in the full pathway
- PWY-6132
- 1 reactions found over 1 reactions in the full pathway
- PWY-5808
- 3 reactions found over 8 reactions in the full pathway
- PWY-5132
- 2 reactions found over 6 reactions in the full pathway
- PWY-5133
- 1 reactions found over 6 reactions in the full pathway