Difference between revisions of "SJ18135"
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(Created page with "Category:gene == Gene SJ18135 == * transcription-direction: ** positive * right-end-position: ** 151379 * left-end-position: ** 146384 * centisome-position: ** 58.12949...") |
(Created page with "Category:gene == Gene SJ12870 == * transcription-direction: ** positive * right-end-position: ** 293758 * left-end-position: ** 273230 * centisome-position: ** 78.04074...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ12870 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 293758 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 273230 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 78.04074 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_carotenoid_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[ACETYL-COA-CARBOXYLTRANSFER-RXN]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[BIOTIN-CARBOXYL-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[DALADALALIG-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[PROPIONYL-COA-CARBOXY-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[RXN1G-4355]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | |
− | + | * [[PWY-7388]] | |
− | * [[ | + | ** '''7''' reactions found over '''11''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-6679]] |
− | * [[ | + | ** '''1''' reactions found over '''9''' reactions in the full pathway |
− | ** ''' | ||
* [[PWY-5744]] | * [[PWY-5744]] | ||
** '''4''' reactions found over '''13''' reactions in the full pathway | ** '''4''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5743]] | ||
+ | ** '''5''' reactions found over '''13''' reactions in the full pathway | ||
* [[PWY-5789]] | * [[PWY-5789]] | ||
** '''8''' reactions found over '''18''' reactions in the full pathway | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY0-1264]] |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7953]] |
− | ** ''' | + | ** '''2''' reactions found over '''8''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6386]] |
− | ** ''' | + | ** '''2''' reactions found over '''8''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6387]] |
− | ** '''10''' reactions found over ''' | + | ** '''2''' reactions found over '''8''' reactions in the full pathway |
+ | * [[PROPIONMET-PWY]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6728]] | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY-7384]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWYG-321]] | ||
+ | ** '''26''' reactions found over '''182''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=293758}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=273230}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=78.04074 }} |
− | {{#set: organism associated=S. | + | {{#set: organism associated=S.japonica_carotenoid_curated}} |
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=13}} |
Revision as of 14:46, 5 January 2021
Contents
Gene SJ12870
- transcription-direction:
- positive
- right-end-position:
- 293758
- left-end-position:
- 273230
- centisome-position:
- 78.04074
Organism(s) associated with this gene
Reaction(s) associated
- ACETYL-COA-CARBOXYLTRANSFER-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- BIOTIN-CARBOXYL-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- DALADALALIG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- PROPIONYL-COA-CARBOXY-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN1G-4355
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-7388
- 7 reactions found over 11 reactions in the full pathway
- PWY-6679
- 1 reactions found over 9 reactions in the full pathway
- PWY-5744
- 4 reactions found over 13 reactions in the full pathway
- PWY-5743
- 5 reactions found over 13 reactions in the full pathway
- PWY-5789
- 8 reactions found over 18 reactions in the full pathway
- PWY0-1264
- 3 reactions found over 4 reactions in the full pathway
- PWY-7953
- 2 reactions found over 8 reactions in the full pathway
- PWY-6386
- 2 reactions found over 8 reactions in the full pathway
- PWY-6387
- 2 reactions found over 8 reactions in the full pathway
- PROPIONMET-PWY
- 1 reactions found over 3 reactions in the full pathway
- PWY-6728
- 11 reactions found over 19 reactions in the full pathway
- PWY-7384
- 6 reactions found over 10 reactions in the full pathway
- PWYG-321
- 26 reactions found over 182 reactions in the full pathway