Difference between revisions of "SJ18284"

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(Created page with "Category:gene == Gene SJ20794 == * transcription-direction: ** negative * right-end-position: ** 118290 * left-end-position: ** 80158 * centisome-position: ** 39.42087...")
(Created page with "Category:gene == Gene SJ18284 == * transcription-direction: ** positive * right-end-position: ** 139005 * left-end-position: ** 126738 * centisome-position: ** 19.549162...")
 
(One intermediate revision by one other user not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ20794 ==
+
== Gene SJ18284 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 118290
+
** 139005
 
* left-end-position:
 
* left-end-position:
−
** 80158
+
** 126738
 
* centisome-position:
 
* centisome-position:
−
** 39.42087    
+
** 19.549162    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
Line 19: Line 19:
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[CDPKIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* [[CDPREDUCT-RXN]]
 
* [[CDPREDUCT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
Line 28: Line 25:
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[DADPKIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[DCDPKIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[DGDPKIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[DTDPKIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[DUDPKIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[GDPKIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* [[GDPREDUCT-RXN]]
 
* [[GDPREDUCT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
Line 52: Line 31:
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[NUCLEOSIDE-DIP-KIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* [[RIBONUCLEOSIDE-DIP-REDUCTI-RXN]]
 
* [[RIBONUCLEOSIDE-DIP-REDUCTI-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
Line 65: Line 41:
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14120]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14228]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* [[RXN0-722]]
 
* [[RXN0-722]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
Line 86: Line 56:
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[UDPKIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* [[UDPREDUCT-RXN]]
 
* [[UDPREDUCT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
Line 97: Line 64:
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* [[PWY-7220]]
 
* [[PWY-7220]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-7227]]
 
* [[PWY-7227]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7205]]
 
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
* [[PWY0-166]]
 
* [[PWY0-166]]
Line 114: Line 78:
 
* [[PWY-6545]]
 
* [[PWY-6545]]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7224]]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7197]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
* [[PWY-7222]]
 
* [[PWY-7222]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-7226]]
 
* [[PWY-7226]]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7187]]
+
{{#set: transcription-direction=positive}}
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
{{#set: right-end-position=139005}}
−
* [[PPGPPMET-PWY]]
+
{{#set: left-end-position=126738}}
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
{{#set: centisome-position=19.549162   }}
−
* [[PWY-7221]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7176]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=118290}}
 
−
{{#set: left-end-position=80158}}
 
−
{{#set: centisome-position=39.42087   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=20}}
+
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=16}}
+
{{#set: nb pathway associated=9}}

Latest revision as of 11:07, 18 March 2021

Gene SJ18284

  • transcription-direction:
    • positive
  • right-end-position:
    • 139005
  • left-end-position:
    • 126738
  • centisome-position:
    • 19.549162

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7220
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7227
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-166
    • 14 reactions found over 13 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7222
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7226
    • 2 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ18284&oldid=135001"