Difference between revisions of "SJ18388"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7004 CPD-7004] == * common-name: ** dihydrogeranylgeranyl chlorophyll a * smiles: ** c=cc2(...")
(Created page with "Category:gene == Gene SJ18388 == * transcription-direction: ** positive * right-end-position: ** 245371 * left-end-position: ** 235866 * centisome-position: ** 95.4274...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7004 CPD-7004] ==
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== Gene SJ18388 ==
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* common-name:
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* transcription-direction:
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** dihydrogeranylgeranyl chlorophyll a
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** positive
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* smiles:
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* right-end-position:
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** c=cc2(c(c)=c4(c=c9(c(c)c(ccc(=o)occ=c(c)cccc(c)ccc=c(c)ccc=c(c)c)c5(=[n+]([mg--]36([n+]1(=c(c(cc)=c(c)c1=cc=2n34)c=c7(c(c)=c8(c(=o)[c-](c(oc)=o)c5=c(n67)8)))))9))))
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** 245371
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* inchi-key:
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* left-end-position:
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** qhucplmrabczrd-usxfxjnzsa-m
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** 235866
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* molecular-weight:
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* centisome-position:
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** 888.463
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** 95.4274   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-7665]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[RXN-7664]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[GPPSYN-RXN]]
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{{#set: common-name=dihydrogeranylgeranyl chlorophyll a}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=qhucplmrabczrd-usxfxjnzsa-m}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=888.463}}
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* [[RXN-11488]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11963]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-8999]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9969]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5180]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-6383]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7410]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7102]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6859]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7736]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5122]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7141]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7659]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7709]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5123]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7182]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5785]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6129]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5815]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=245371}}
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{{#set: left-end-position=235866}}
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{{#set: centisome-position=95.4274    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=6}}
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{{#set: nb pathway associated=14}}

Latest revision as of 11:04, 18 March 2021

Gene SJ18388

  • transcription-direction:
    • positive
  • right-end-position:
    • 245371
  • left-end-position:
    • 235866
  • centisome-position:
    • 95.4274

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5785
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6129
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5815
    • 1 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ18388&oldid=133285"