Difference between revisions of "SJ18541"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-19159 CPD-19159] == * common-name: ** (s)-3-hydroxy-(11z)-octadecenoyl-coa * smiles: ** ccc...")
 
(Created page with "Category:gene == Gene SJ18541 == * transcription-direction: ** positive * right-end-position: ** 145855 * left-end-position: ** 135008 * centisome-position: ** 55.630047...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-19159 CPD-19159] ==
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== Gene SJ18541 ==
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* common-name:
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* transcription-direction:
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** (s)-3-hydroxy-(11z)-octadecenoyl-coa
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** positive
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* smiles:
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* right-end-position:
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** ccccccc=ccccccccc(o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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** 145855
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* inchi-key:
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* left-end-position:
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** scdxbwnpjageek-kboaxvdlsa-j
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** 135008
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* molecular-weight:
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* centisome-position:
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** 1043.952
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** 55.630047   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-17786]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[RXN-17785]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[ASPCARBTRANS-RXN]]
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{{#set: common-name=(s)-3-hydroxy-(11z)-octadecenoyl-coa}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=scdxbwnpjageek-kboaxvdlsa-j}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=1043.952}}
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* [[ORNCARBAMTRANSFER-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-13482]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-5686]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7790]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7791]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-4984]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[CITRULLINE-DEG-PWY]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[ARGSYNBSUB-PWY]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7400]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[ARGSYN-PWY]]
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** '''5''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-4981]]
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** '''3''' reactions found over '''2''' reactions in the full pathway
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* [[CITRULBIO-PWY]]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=145855}}
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{{#set: left-end-position=135008}}
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{{#set: centisome-position=55.630047    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=4}}
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{{#set: nb pathway associated=11}}

Latest revision as of 11:04, 18 March 2021

Gene SJ18541

  • transcription-direction:
    • positive
  • right-end-position:
    • 145855
  • left-end-position:
    • 135008
  • centisome-position:
    • 55.630047

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • CITRULLINE-DEG-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY
    • 5 reactions found over 4 reactions in the full pathway
  • PWY-4981
    • 3 reactions found over 2 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-5
    • 3 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ18541&oldid=133231"