Difference between revisions of "SJ18627"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ09312 == * transcription-direction: ** positive * right-end-position: ** 248837 * left-end-position: ** 224166 * centisome-position: ** 53.554813...")
(Created page with "Category:gene == Gene SJ18627 == * transcription-direction: ** negative * right-end-position: ** 56308 * left-end-position: ** 52653 * centisome-position: ** 21.849169...")
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ09312 ==
+
== Gene SJ18627 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 248837
+
** 56308
 
* left-end-position:
 
* left-end-position:
−
** 224166
+
** 52653
 
* centisome-position:
 
* centisome-position:
−
** 53.554813    
+
** 21.849169    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PDHam2hi]]
+
* [[2-ACYLGLYCEROL-O-ACYLTRANSFERASE-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PYFLAVOXRE-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PYRUFLAVREDUCT-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PYRUVDEH-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12508]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[2.3.1.75-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12583]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN0-1134]]
+
* [[RETINOL-O-FATTY-ACYLTRANSFERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12547]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12639]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-15090]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9356]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXNQT-4193]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-5885]]
−
* [[NPGLUCAT-PWY]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5884]]
−
* [[PWY-5493]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6863]]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6587]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6588]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5497]]
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[PWY-6583]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5483]]
 
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[CENTFERM-PWY]]
+
* [[TRIGLSYN-PWY]]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[P42-PWY]]
 
 
** '''5''' reactions found over '''7''' reactions in the full pathway
 
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5392]]
+
* [[PWY-6873]]
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[P142-PWY]]
+
* [[PWY-7420]]
−
** '''2''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[GLUDEG-II-PWY]]
+
* [[PWY-282]]
−
** '''3''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6142]]
+
{{#set: transcription-direction=negative}}
−
** '''10''' reactions found over '''13''' reactions in the full pathway
+
{{#set: right-end-position=56308}}
−
* [[PWY-5538]]
+
{{#set: left-end-position=52653}}
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
{{#set: centisome-position=21.849169   }}
−
* [[P23-PWY]]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6876]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5600]]
 
−
** '''2''' reactions found over '''1''' reactions in the full pathway
 
−
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
 
−
** '''3''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7218]]
 
−
** '''7''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5482]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5537]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6886]]
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7384]]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PYRUVDEHYD-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=248837}}
 
−
{{#set: left-end-position=224166}}
 
−
{{#set: centisome-position=53.554813   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=25}}
+
{{#set: nb pathway associated=6}}

Latest revision as of 11:10, 18 March 2021

Gene SJ18627

  • transcription-direction:
    • negative
  • right-end-position:
    • 56308
  • left-end-position:
    • 52653
  • centisome-position:
    • 21.849169

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5885
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5884
    • 1 reactions found over 2 reactions in the full pathway
  • TRIGLSYN-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6873
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7420
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-282
    • 1 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ18627&oldid=136453"