Difference between revisions of "SJ18755"

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(Created page with "Category:gene == Gene SJ22527 == * transcription-direction: ** positive * right-end-position: ** 131307 * left-end-position: ** 122007 * centisome-position: ** 69.65142...")
(Created page with "Category:gene == Gene SJ07762 == * transcription-direction: ** negative * right-end-position: ** 33939 * left-end-position: ** 27138 * centisome-position: ** 43.40205...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ22527 ==
+
== Gene SJ07762 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 131307
+
** 33939
 
* left-end-position:
 
* left-end-position:
−
** 122007
+
** 27138
 
* centisome-position:
 
* centisome-position:
−
** 69.65142    
+
** 43.40205    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[CARBODEHYDRAT-RXN]]
−
* [[6.3.5.6-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[6.3.5.7-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN0-5224]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[AMIDASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[GLUTAMINE--TRNA-LIGASE-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[GUANIDINOBUTANAMIDE-NH3-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[PYRAZIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[R311-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14727]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14728]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17608]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXNN-404]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY490-4]]
+
* [[PWY-6142]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-5921]]
+
* [[PWY-7115]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* [[TRNA-CHARGING-PWY]]
+
* [[PWYQT-4429]]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
−
* [[ARGDEG-V-PWY]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7308]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5025]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-3161]]
 
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-581]]
+
* [[CYANCAT-PWY]]
−
** '''5''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[PWY-5744]]
−
{{#set: right-end-position=131307}}
+
** '''4''' reactions found over '''13''' reactions in the full pathway
−
{{#set: left-end-position=122007}}
+
* [[PWY-5789]]
−
{{#set: centisome-position=69.65142   }}
+
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7117]]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5743]]
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-241]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=33939}}
 +
{{#set: left-end-position=27138}}
 +
{{#set: centisome-position=43.40205   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=11}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=9}}

Revision as of 09:25, 27 August 2019

Gene SJ07762

  • transcription-direction:
    • negative
  • right-end-position:
    • 33939
  • left-end-position:
    • 27138
  • centisome-position:
    • 43.40205

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 10 reactions in the full pathway
  • PWYQT-4429
    • 2 reactions found over 2 reactions in the full pathway
  • CYANCAT-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-241
    • 5 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ18755&oldid=29849"