Difference between revisions of "SJ18779"

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(Created page with "Category:gene == Gene SJ02279 == * transcription-direction: ** positive * right-end-position: ** 97684 * left-end-position: ** 80393 * centisome-position: ** 57.882084...")
(Created page with "Category:gene == Gene SJ18779 == * transcription-direction: ** negative * right-end-position: ** 199786 * left-end-position: ** 177818 * centisome-position: ** 75.242355...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ02279 ==
+
== Gene SJ18779 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 97684
+
** 199786
 
* left-end-position:
 
* left-end-position:
−
** 80393
+
** 177818
 
* centisome-position:
 
* centisome-position:
−
** 57.882084    
+
** 75.242355    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[1.1.1.34-RXN]]
−
* [[PHOSMANMUT-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[PHOSPHOGLUCMUT-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16997]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16998]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-922]]
−
* [[PWY-5659]]
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-6174]]
−
* [[PWY-7456]]
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-7391]]
−
* [[PWY-7586]]
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-7524]]
−
* [[PWY-882]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6737]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7238]]
 
 
** '''5''' reactions found over '''8''' reactions in the full pathway
 
** '''5''' reactions found over '''8''' reactions in the full pathway
−
* [[GLYCOGENSYNTH-PWY]]
+
{{#set: transcription-direction=negative}}
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
{{#set: right-end-position=199786}}
−
* [[GLUCOSE1PMETAB-PWY]]
+
{{#set: left-end-position=177818}}
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
{{#set: centisome-position=75.242355   }}
−
* [[PWY-7900]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6731]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5941]]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[GLYCOCAT-PWY]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-622]]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6317]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2723]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-3801]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7343]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5940]]
 
−
** '''2''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7902]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5384]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5661]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-422]]
 
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=97684}}
 
−
{{#set: left-end-position=80393}}
 
−
{{#set: centisome-position=57.882084   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=4}}
+
{{#set: nb reaction associated=1}}
−
{{#set: nb pathway associated=22}}
+
{{#set: nb pathway associated=4}}

Latest revision as of 11:01, 18 March 2021

Gene SJ18779

  • transcription-direction:
    • negative
  • right-end-position:
    • 199786
  • left-end-position:
    • 177818
  • centisome-position:
    • 75.242355

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6174
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7391
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-7524
    • 5 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ18779&oldid=131779"