Difference between revisions of "SJ18895"

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(Created page with "Category:gene == Gene SJ07665 == * transcription-direction: ** negative * right-end-position: ** 198751 * left-end-position: ** 179273 * centisome-position: ** 39.95805...")
(Created page with "Category:gene == Gene SJ18895 == * transcription-direction: ** positive * right-end-position: ** 217149 * left-end-position: ** 198617 * centisome-position: ** 84.84787...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ07665 ==
+
== Gene SJ18895 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 198751
+
** 217149
 
* left-end-position:
 
* left-end-position:
−
** 179273
+
** 198617
 
* centisome-position:
 
* centisome-position:
−
** 39.95805    
+
** 84.84787    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[GAPDH_]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[orthology]]
+
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
* [[GAPOXNPHOSPHN-RXN]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[5-NUCLEOTID-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[AMP-DEPHOSPHORYLATION-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[NUCLEOTIDASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14025]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14026]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14227]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14473]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17947]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-17948]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[TRIOSEPISOMERIZATION-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-5841]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7607]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7609]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[XMPXAN-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[GLUCONEO-PWY]]
+
* [[SALVADEHYPOX-PWY]]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[P124-PWY]]
+
* [[PWY-7821]]
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[P185-PWY]]
+
* [[PWY-7185]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[P122-PWY]]
+
* [[PWY-5381]]
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
** '''6''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-5484]]
+
* [[NAD-BIOSYNTHESIS-II]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-1042]]
+
* [[PWY-6596]]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
* [[GLYCOLYSIS]]
+
* [[PWY-6606]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[ANAGLYCOLYSIS-PWY]]
+
* [[PWY-6607]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[SUCSYN-PWY]]
+
* [[PWY-6608]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY66-399]]
+
* [[PWY-5695]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6901]]
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7003]]
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
* [[CALVIN-PWY]]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P341-PWY]]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6142]]
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY66-373]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
 
</div>
 
</div>
−
{{#set: transcription-direction=negative}}
+
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=198751}}
+
{{#set: right-end-position=217149}}
−
{{#set: left-end-position=179273}}
+
{{#set: left-end-position=198617}}
−
{{#set: centisome-position=39.95805   }}
+
{{#set: centisome-position=84.84787   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=14}}
−
{{#set: nb pathway associated=16}}
+
{{#set: nb pathway associated=10}}

Latest revision as of 11:07, 18 March 2021

Gene SJ18895

  • transcription-direction:
    • positive
  • right-end-position:
    • 217149
  • left-end-position:
    • 198617
  • centisome-position:
    • 84.84787

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • SALVADEHYPOX-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7821
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-7185
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5381
    • 6 reactions found over 11 reactions in the full pathway
  • NAD-BIOSYNTHESIS-II
    • 4 reactions found over 3 reactions in the full pathway
  • PWY-6596
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-6606
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6607
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6608
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5695
    • 4 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ18895&oldid=134749"