Difference between revisions of "SJ19088"
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(Created page with "Category:gene == Gene SJ21639 == * transcription-direction: ** negative * right-end-position: ** 40629 * left-end-position: ** 33823 * centisome-position: ** 17.917097...") |
(Created page with "Category:gene == Gene SJ19088 == * transcription-direction: ** positive * right-end-position: ** 206262 * left-end-position: ** 192051 * centisome-position: ** 16.834515...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ19088 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 206262 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 192051 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 16.834515 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[APAPT]] |
| − | ** Category: [[ | + | ** Category: [[orthology]] |
| − | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | * [[ | + | * [[RXN0-5217]] |
| − | ** Category: [[ | + | ** Category: [[orthology]] |
| − | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | * [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| + | * [[SPERMIDINESYN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[SPERMINE-SYNTHASE-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | == Pathway(s) associated == |
| − | {{#set: right-end-position= | + | * [[PWY0-1303]] |
| − | {{#set: left-end-position= | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
| − | {{#set: centisome-position= | + | * [[BSUBPOLYAMSYN-PWY]] |
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[ARGSPECAT-PWY]] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[POLYAMINSYN3-PWY]] | ||
| + | ** '''4''' reactions found over '''1''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=206262}} | ||
| + | {{#set: left-end-position=192051}} | ||
| + | {{#set: centisome-position=16.834515 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| + | {{#set: nb pathway associated=4}} | ||
Latest revision as of 11:08, 18 March 2021
Contents
Gene SJ19088
- transcription-direction:
- positive
- right-end-position:
- 206262
- left-end-position:
- 192051
- centisome-position:
- 16.834515
Organism(s) associated with this gene
Reaction(s) associated
- APAPT
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN0-5217
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- SPERMIDINESYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- SPERMINE-SYNTHASE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY0-1303
- 1 reactions found over 2 reactions in the full pathway
- BSUBPOLYAMSYN-PWY
- 2 reactions found over 2 reactions in the full pathway
- ARGSPECAT-PWY
- 2 reactions found over 2 reactions in the full pathway
- POLYAMINSYN3-PWY
- 4 reactions found over 1 reactions in the full pathway
