Difference between revisions of "SJ19133"
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(Created page with "Category:gene == Gene SJ21171 == * transcription-direction: ** positive * right-end-position: ** 161807 * left-end-position: ** 148958 * centisome-position: ** 75.45883...") |
(Created page with "Category:gene == Gene SJ02830 == * transcription-direction: ** negative * right-end-position: ** 160507 * left-end-position: ** 153349 * centisome-position: ** 28.769245...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ02830 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 160507 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 153349 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 28.769245 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[2.7.8.23-RXN]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[23-DIMETHYLMALATE-LYASE-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[ISOCIT-CLEAV-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[RXN- | + | * [[RXN-10827]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-10828]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-5055]] |
| − | ** '''6''' reactions found over '''11''' reactions in the full pathway | + | ** '''1''' reactions found over '''9''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-6969]] |
| − | {{#set: right-end-position= | + | ** '''10''' reactions found over '''12''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[GLYOXYLATE-BYPASS]] |
| − | {{#set: centisome-position= | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
| + | * [[P105-PWY]] | ||
| + | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
| + | * [[PWY-7769]] | ||
| + | ** '''2''' reactions found over '''25''' reactions in the full pathway | ||
| + | * [[PWY-6322]] | ||
| + | ** '''2''' reactions found over '''25''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=160507}} | ||
| + | {{#set: left-end-position=153349}} | ||
| + | {{#set: centisome-position=28.769245 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
Revision as of 09:25, 27 August 2019
Contents
Gene SJ02830
- transcription-direction:
- negative
- right-end-position:
- 160507
- left-end-position:
- 153349
- centisome-position:
- 28.769245
Organism(s) associated with this gene
Reaction(s) associated
- 2.7.8.23-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- 23-DIMETHYLMALATE-LYASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- ISOCIT-CLEAV-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10827
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-10828
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-5055
- 1 reactions found over 9 reactions in the full pathway
- PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- GLYOXYLATE-BYPASS
- 6 reactions found over 6 reactions in the full pathway
- P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- PWY-7769
- 2 reactions found over 25 reactions in the full pathway
- PWY-6322
- 2 reactions found over 25 reactions in the full pathway
