Difference between revisions of "SJ19186"

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(Created page with "Category:gene == Gene SJ06474 == * transcription-direction: ** positive * right-end-position: ** 111869 * left-end-position: ** 106643 * centisome-position: ** 22.42722...")
(Created page with "Category:gene == Gene SJ06446 == * transcription-direction: ** negative * right-end-position: ** 22392 * left-end-position: ** 12545 * centisome-position: ** 2.6382365...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ06474 ==
+
== Gene SJ06446 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 111869
+
** 22392
 
* left-end-position:
 
* left-end-position:
−
** 106643
+
** 12545
 
* centisome-position:
 
* centisome-position:
−
** 22.42722    
+
** 2.6382365    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[1.8.1.4-RXN]]
+
* [[4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[2-KETO-ADIPATE-DEHYDROG-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[2OXOGLUTARATEDEH-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[2OXOGLUTDECARB-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PDHe3mr]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PYRUVDEH-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7716]]
+
* [[LTAA-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14146]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-7719]]
+
* [[RXN-9896]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-8629]]
+
* [[THREONINE-ALDOLASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN0-1132]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN0-1147]]
 
−
** Category: [[orthology]]
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]]
−
* [[PWY-5652]]
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-6100]]
−
* [[PWY66-425]]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5436]]
−
* [[LYSINE-DEG1-PWY]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
* [[GLYSYN-THR-PWY]]
−
* [[PWY-5690]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[TCA]]
+
{{#set: right-end-position=22392}}
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
{{#set: left-end-position=12545}}
−
* [[PWY-7254]]
+
{{#set: centisome-position=2.6382365   }}
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
* [[PWY66-398]]
+
{{#set: nb reaction associated=5}}
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
{{#set: nb pathway associated=4}}
−
* [[PWY-5084]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
 
−
** '''3''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7218]]
 
−
** '''7''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5482]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5537]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6886]]
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7384]]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5046]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[GLYCLEAV-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PYRUVDEHYD-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=111869}}
 
−
{{#set: left-end-position=106643}}
 
−
{{#set: centisome-position=22.42722   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
−
{{#set: nb reaction associated=11}}
 
−
{{#set: nb pathway associated=17}}
 

Revision as of 14:51, 5 January 2021

Gene SJ06446

  • transcription-direction:
    • negative
  • right-end-position:
    • 22392
  • left-end-position:
    • 12545
  • centisome-position:
    • 2.6382365

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ19186&oldid=57467"