Difference between revisions of "SJ19201"
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(Created page with "Category:gene == Gene SJ00484 == * transcription-direction: ** positive * right-end-position: ** 97905 * left-end-position: ** 80034 * centisome-position: ** 48.075397...") |
(Created page with "Category:gene == Gene SJ19201 == * transcription-direction: ** negative * right-end-position: ** 220230 * left-end-position: ** 194043 * centisome-position: ** 84.09085...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ19201 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 220230 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 194043 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 84.09085 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[2-KETO-ADIPATE-DEHYDROG-RXN]] |
| − | |||
| − | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| − | *** source: [[ | + | * [[AKGDHe2r]] |
| − | * [[RXN0- | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN0-1147]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-5652]] |
| − | ** ''' | + | ** '''2''' reactions found over '''5''' reactions in the full pathway |
| − | * [[ | + | * [[PWY66-425]] |
** '''1''' reactions found over '''9''' reactions in the full pathway | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
| − | * [[ | + | * [[LYSINE-DEG1-PWY]] |
| − | + | ** '''2''' reactions found over '''5''' reactions in the full pathway | |
| − | + | * [[PWY-5084]] | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | ** ''' | ||
| − | * [[PWY- | ||
** '''3''' reactions found over '''3''' reactions in the full pathway | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| − | {{#set: transcription-direction= | + | * [[PWY66-398]] |
| − | {{#set: right-end-position= | + | ** '''10''' reactions found over '''10''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | {{#set: transcription-direction=negative}} |
| − | {{#set: centisome-position= | + | {{#set: right-end-position=220230}} |
| + | {{#set: left-end-position=194043}} | ||
| + | {{#set: centisome-position=84.09085 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Latest revision as of 11:07, 18 March 2021
Contents
Gene SJ19201
- transcription-direction:
- negative
- right-end-position:
- 220230
- left-end-position:
- 194043
- centisome-position:
- 84.09085
Organism(s) associated with this gene
Reaction(s) associated
- 2-KETO-ADIPATE-DEHYDROG-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- AKGDHe2r
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN0-1147
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5652
- 2 reactions found over 5 reactions in the full pathway
- PWY66-425
- 1 reactions found over 9 reactions in the full pathway
- LYSINE-DEG1-PWY
- 2 reactions found over 5 reactions in the full pathway
- PWY-5084
- 3 reactions found over 3 reactions in the full pathway
- PWY66-398
- 10 reactions found over 10 reactions in the full pathway
