Difference between revisions of "SJ19470"
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(Created page with "Category:gene == Gene SJ15445 == * transcription-direction: ** positive * right-end-position: ** 53482 * left-end-position: ** 32799 * centisome-position: ** 11.096414...") |
(Created page with "Category:gene == Gene SJ19470 == * transcription-direction: ** positive * right-end-position: ** 100516 * left-end-position: ** 88871 * centisome-position: ** 39.193214...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ19470 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 100516 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 88871 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 39.193214 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[PDHam2mi]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[PYFLAVOXRE-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[PYRUFLAVREDUCT-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[PYRUVDEH-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12508]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12583]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | + | * [[RXN0-1134]] | |
− | |||
− | *** source: [[ | ||
− | * [[RXN0- | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''8''' reactions found over ''' | + | * [[NPGLUCAT-PWY]] |
− | * [[PWY- | + | ** '''4''' reactions found over '''9''' reactions in the full pathway |
− | ** '''6''' reactions found over '''7''' reactions in the full pathway | + | * [[PWY-5493]] |
− | * [[PWY- | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-6863]] |
− | * [[PWY- | + | ** '''9''' reactions found over '''11''' reactions in the full pathway |
− | ** '''8''' reactions found over ''' | + | * [[PWY-6587]] |
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6588]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5497]] | ||
+ | ** '''10''' reactions found over '''24''' reactions in the full pathway | ||
+ | * [[PWY-6583]] | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5483]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[CENTFERM-PWY]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[P42-PWY]] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5392]] | ||
+ | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P142-PWY]] | ||
+ | ** '''2''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[GLUDEG-II-PWY]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6142]] | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5538]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[P23-PWY]] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6876]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5600]] | ||
+ | ** '''2''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS-TCA-GLYOX-BYPASS]] | ||
+ | ** '''3''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-7218]] | ||
+ | ** '''7''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5482]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-5537]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6886]] | ||
+ | ** '''8''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7384]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PYRUVDEHYD-PWY]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | </div> | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=100516}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=88871}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=39.193214 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=7}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=25}} |
Latest revision as of 11:08, 18 March 2021
Contents
Gene SJ19470
- transcription-direction:
- positive
- right-end-position:
- 100516
- left-end-position:
- 88871
- centisome-position:
- 39.193214
Organism(s) associated with this gene
Reaction(s) associated
- PDHam2mi
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PYFLAVOXRE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- PYRUFLAVREDUCT-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- PYRUVDEH-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12508
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-12583
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN0-1134
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- NPGLUCAT-PWY
- 4 reactions found over 9 reactions in the full pathway
- PWY-5493
- 1 reactions found over 2 reactions in the full pathway
- PWY-6863
- 9 reactions found over 11 reactions in the full pathway
- PWY-6587
- 2 reactions found over 3 reactions in the full pathway
- PWY-6588
- 2 reactions found over 5 reactions in the full pathway
- PWY-5497
- 10 reactions found over 24 reactions in the full pathway
- PWY-6583
- 6 reactions found over 8 reactions in the full pathway
- PWY-5483
- 1 reactions found over 2 reactions in the full pathway
- CENTFERM-PWY
- 5 reactions found over 7 reactions in the full pathway
- P42-PWY
- 5 reactions found over 7 reactions in the full pathway
- PWY-5392
- 6 reactions found over 12 reactions in the full pathway
- P142-PWY
- 2 reactions found over 1 reactions in the full pathway
- GLUDEG-II-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- PWY-5538
- 2 reactions found over 2 reactions in the full pathway
- P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWY-6876
- 2 reactions found over 5 reactions in the full pathway
- PWY-5600
- 2 reactions found over 1 reactions in the full pathway
- GLYCOLYSIS-TCA-GLYOX-BYPASS
- 3 reactions found over 1 reactions in the full pathway
- PWY-7218
- 7 reactions found over 4 reactions in the full pathway
- PWY-5482
- 2 reactions found over 3 reactions in the full pathway
- PWY-5537
- 2 reactions found over 2 reactions in the full pathway
- PWY-6886
- 8 reactions found over 5 reactions in the full pathway
- PWY-7384
- 6 reactions found over 10 reactions in the full pathway
- PYRUVDEHYD-PWY
- 3 reactions found over 3 reactions in the full pathway