Difference between revisions of "SJ19480"

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(Created page with "Category:gene == Gene SJ07504 == * transcription-direction: ** negative * right-end-position: ** 146229 * left-end-position: ** 131682 * centisome-position: ** 28.932005...")
(Created page with "Category:gene == Gene SJ18341 == * transcription-direction: ** positive * right-end-position: ** 179822 * left-end-position: ** 154126 * centisome-position: ** 62.00931...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ07504 ==
+
== Gene SJ18341 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 146229
+
** 179822
 
* left-end-position:
 
* left-end-position:
−
** 131682
+
** 154126
 
* centisome-position:
 
* centisome-position:
−
** 28.932005    
+
** 62.00931    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ATPASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[ADENYL-KIN-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[GLUC1PURIDYLTRANS-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGCM]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGMTh]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PHOSPHOGLUCMUT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
* [[RXN-14456]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16997]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12195]]
+
* [[RXN-16998]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12196]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-5462]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7210]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-7219]]
−
* [[PWY-7198]]
+
** '''4''' reactions found over '''3''' reactions in the full pathway
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-7817]]
−
* [[PWY-7184]]
+
** '''6''' reactions found over '''16''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7238]]
−
* [[PWY-6545]]
+
** '''5''' reactions found over '''8''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-6527]]
−
{{#set: transcription-direction=negative}}
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
{{#set: right-end-position=146229}}
+
* [[PWY-3801]]
−
{{#set: left-end-position=131682}}
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
{{#set: centisome-position=28.932005   }}
+
* [[PWY-7343]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6737]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLYCOGENSYNTH-PWY]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[GLUCOSE1PMETAB-PWY]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7900]]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6731]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5941]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[GLYCOCAT-PWY]]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-622]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6317]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-2723]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5940]]
 +
** '''2''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7902]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5384]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5661]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-422]]
 +
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=179822}}
 +
{{#set: left-end-position=154126}}
 +
{{#set: centisome-position=62.00931   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=8}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=21}}

Revision as of 18:50, 14 January 2021

Gene SJ18341

  • transcription-direction:
    • positive
  • right-end-position:
    • 179822
  • left-end-position:
    • 154126
  • centisome-position:
    • 62.00931

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7219
    • 4 reactions found over 3 reactions in the full pathway
  • PWY-7817
    • 6 reactions found over 16 reactions in the full pathway
  • PWY-7238
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-6527
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-3801
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7343
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6737
    • 2 reactions found over 4 reactions in the full pathway
  • GLYCOGENSYNTH-PWY
    • 1 reactions found over 4 reactions in the full pathway
  • GLUCOSE1PMETAB-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7900
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6731
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5941
    • 3 reactions found over 6 reactions in the full pathway
  • GLYCOCAT-PWY
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-622
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-6317
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-2723
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5940
    • 2 reactions found over 18 reactions in the full pathway
  • PWY-7902
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5384
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5661
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-422
    • 5 reactions found over n.a reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ19480&oldid=96692"