|
|
| Line 1: |
Line 1: |
| − | [[Category:gene]] | + | [[Category:metabolite]] |
| − | == Gene SJ17851 == | + | == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SER SER] == |
| − | * transcription-direction: | + | * common-name: |
| − | ** negative | + | ** l-serine |
| − | * right-end-position: | + | * smiles: |
| − | ** 461676 | + | ** c(o)c([n+])c(=o)[o-] |
| − | * left-end-position: | + | * inchi-key: |
| − | ** 422006 | + | ** mtcfgrxmjlqnbg-reohclbhsa-n |
| − | * centisome-position: | + | * molecular-weight: |
| − | ** 63.376446 | + | ** 105.093 |
| − | == Organism(s) associated with this gene == | + | == Reaction(s) known to consume the compound == |
| − | * [[S.japonica_carotenoid_curated]] | + | * [[4.3.1.17-RXN]] |
| − | == Reaction(s) associated ==
| + | * [[5.1.1.18-RXN]] |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * [[CYSTATHIONINE-BETA-SYNTHASE-RXN]] |
| − | * [[ASPCARBTRANS-RXN]]
| + | * [[GLYOHMETRANS-RXN]] |
| − | ** Category: [[annotation]]
| + | * [[PHOSPHASERSYN-RXN]] |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| + | * [[RXN-1382]] |
| − | * [[CARBPSYN-RXN]]
| + | * [[RXN-15125]] |
| − | ** Category: [[annotation]] | + | * [[RXN0-2161]] |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| + | * [[RXN0-2382]] |
| − | ** Category: [[orthology]]
| + | * [[SERINE--TRNA-LIGASE-RXN]] |
| − | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| + | * [[SERINE-C-PALMITOYLTRANSFERASE-RXN]] |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| + | * [[SERINE-O-ACETTRAN-RXN]] |
| − | * [[DALADALALIG-RXN]]
| + | * [[TRYPSYN-RXN]] |
| − | ** Category: [[annotation]] | + | * [[biomass_rxn]] |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | + | == Reaction(s) known to produce the compound == |
| − | * [[DIHYDROOROT-RXN]]
| + | * [[CYSTATHIONINE-BETA-SYNTHASE-RXN]] |
| − | ** Category: [[annotation]]
| + | * [[GLYOHMETRANS-RXN]] |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| + | * [[PHOSPHASERSYN-RXN]] |
| − | * [[GLUTAMIN-RXN]] | + | * [[RXN-1382]] |
| − | ** Category: [[annotation]]
| + | * [[RXN-14136]] |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| + | * [[RXN0-5114]] |
| − | ** Category: [[orthology]]
| + | == Reaction(s) of unknown directionality == |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| + | {{#set: common-name=l-serine}} |
| − | * [[RXN-13202]] | + | {{#set: inchi-key=inchikey=mtcfgrxmjlqnbg-reohclbhsa-n}} |
| − | ** Category: [[annotation]]
| + | {{#set: molecular-weight=105.093}} |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-14196]] | |
| − | ** Category: [[annotation]] | |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | |
| − | ** Category: [[orthology]] | |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-16909]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * [[RXN-16910]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
| − | </div>
| |
| − | == Pathway(s) associated ==
| |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * [[PWY-5686]]
| |
| − | ** '''6''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7790]] | |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7791]]
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7400]]
| |
| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[ARGSYN-PWY]] | |
| − | ** '''5''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[ARGSYNBSUB-PWY]] | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY-5154]] | |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY-7953]]
| |
| − | ** '''2''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-6386]]
| |
| − | ** '''2''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[PWY-6387]] | |
| − | ** '''2''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[CITRULBIO-PWY]] | |
| − | ** '''7''' reactions found over '''8''' reactions in the full pathway
| |
| − | * [[GLUTAMINDEG-PWY]] | |
| − | ** '''1''' reactions found over '''1''' reactions in the full pathway
| |
| − | * [[PWY-4984]] | |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-7693]] | |
| − | ** '''3''' reactions found over '''13''' reactions in the full pathway
| |
| − | </div>
| |
| − | {{#set: transcription-direction=negative}} | |
| − | {{#set: right-end-position=461676}} | |
| − | {{#set: left-end-position=422006}}
| |
| − | {{#set: centisome-position=63.376446 }} | |
| − | {{#set: organism associated=S.japonica_carotenoid_curated}}
| |
| − | {{#set: nb reaction associated=9}}
| |
| − | {{#set: nb pathway associated=14}}
| |
