Difference between revisions of "SJ19809"

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(Created page with "Category:gene == Gene SJ15156 == * transcription-direction: ** negative * right-end-position: ** 127929 * left-end-position: ** 114885 * centisome-position: ** 38.217037...")
(Created page with "Category:gene == Gene SJ19809 == * transcription-direction: ** positive * right-end-position: ** 147186 * left-end-position: ** 138135 * centisome-position: ** 62.824905...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ15156 ==
+
== Gene SJ19809 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 127929
+
** 147186
 
* left-end-position:
 
* left-end-position:
−
** 114885
+
** 138135
 
* centisome-position:
 
* centisome-position:
−
** 38.217037    
+
** 62.824905    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[RNA-DIRECTED-RNA-POLYMERASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: transcription-direction=negative}}
+
* [[ALANINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
−
{{#set: right-end-position=127929}}
+
** Category: [[annotation]]
−
{{#set: left-end-position=114885}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: centisome-position=38.217037   }}
+
* [[ALANINE-AMINOTRANSFERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[D-ALANINE-AMINOTRANSFERASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[GLYCINE-AMINOTRANSFERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13698]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
* [[GLYSYN-ALA-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7383]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[ALANINE-SYN2-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ALANINE-DEG3-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ALACAT2-PWY]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7117]]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7115]]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-181]]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=147186}}
 +
{{#set: left-end-position=138135}}
 +
{{#set: centisome-position=62.824905   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=6}}
 +
{{#set: nb pathway associated=8}}

Latest revision as of 11:07, 18 March 2021

Gene SJ19809

  • transcription-direction:
    • positive
  • right-end-position:
    • 147186
  • left-end-position:
    • 138135
  • centisome-position:
    • 62.824905

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLYSYN-ALA-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7383
    • 4 reactions found over 7 reactions in the full pathway
  • ALANINE-SYN2-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • ALANINE-DEG3-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • ALACAT2-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-181
    • 5 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ19809&oldid=135021"