Difference between revisions of "SJ19894"

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(Created page with "Category:gene == Gene SJ12004 == * transcription-direction: ** positive * right-end-position: ** 307054 * left-end-position: ** 288572 * centisome-position: ** 79.65177...")
(Created page with "Category:gene == Gene SJ18316 == * transcription-direction: ** negative * right-end-position: ** 81825 * left-end-position: ** 66220 * centisome-position: ** 10.214344...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12004 ==
+
== Gene SJ18316 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 307054
+
** 81825
 
* left-end-position:
 
* left-end-position:
−
** 288572
+
** 66220
 
* centisome-position:
 
* centisome-position:
−
** 79.65177    
+
** 10.214344    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[2.4.1.119-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[3.1.1.64-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ACYL-COA-HYDROLASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[CARBOXYLESTERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[FACOAE18111Z]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[FACOAE182]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PALMITOYL-COA-HYDROLASE-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-16761]]
+
* [[RETINYL-PALMITATE-ESTERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10708]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10711]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10767]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12252]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12575]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9624]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXNQT-4366]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]]
+
* [[PWY-5994]]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-1121]]
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-6733]]
 +
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-321]]
 +
** '''3''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-735]]
 
** '''16''' reactions found over '''19''' reactions in the full pathway
 
** '''16''' reactions found over '''19''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[PWY-6303]]
−
{{#set: right-end-position=307054}}
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
{{#set: left-end-position=288572}}
+
* [[PWY-6857]]
−
{{#set: centisome-position=79.65177   }}
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
* [[PWY3O-355]]
−
{{#set: nb reaction associated=2}}
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
{{#set: nb pathway associated=1}}
+
* [[PWY-5972]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=81825}}
 +
{{#set: left-end-position=66220}}
 +
{{#set: centisome-position=10.214344   }}
 +
{{#set: organism associated=S.japonica_sterols_curated}}
 +
{{#set: nb reaction associated=14}}
 +
{{#set: nb pathway associated=9}}

Revision as of 20:24, 18 December 2020

Gene SJ18316

  • transcription-direction:
    • negative
  • right-end-position:
    • 81825
  • left-end-position:
    • 66220
  • centisome-position:
    • 10.214344

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-1121
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-6733
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-321
    • 3 reactions found over 16 reactions in the full pathway
  • PWY-735
    • 16 reactions found over 19 reactions in the full pathway
  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway
  • PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5972
    • 4 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ19894&oldid=43200"