Difference between revisions of "SJ19927"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ00150 == * transcription-direction: ** negative * right-end-position: ** 94281 * left-end-position: ** 87831 * centisome-position: ** 51.260036...")
(Created page with "Category:gene == Gene SJ19927 == * transcription-direction: ** positive * right-end-position: ** 61070 * left-end-position: ** 52562 * centisome-position: ** 8.422546...")
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00150 ==
+
== Gene SJ19927 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 94281
+
** 61070
 
* left-end-position:
 
* left-end-position:
−
** 87831
+
** 52562
 
* centisome-position:
 
* centisome-position:
−
** 51.260036    
+
** 8.422546    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN]]
+
* [[RXN-13185]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7984]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7985]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* [[RXN1F-20]]
−
* [[RXN-11855]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: transcription-direction=negative}}
+
== Pathway(s) associated ==
−
{{#set: right-end-position=94281}}
+
* [[PWY-5945]]
−
{{#set: left-end-position=87831}}
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
{{#set: centisome-position=51.260036   }}
+
* [[PWY-5531]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=61070}}
 +
{{#set: left-end-position=52562}}
 +
{{#set: centisome-position=8.422546   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=2}}
+
{{#set: nb reaction associated=4}}
 +
{{#set: nb pathway associated=4}}

Latest revision as of 11:04, 18 March 2021

Gene SJ19927

  • transcription-direction:
    • positive
  • right-end-position:
    • 61070
  • left-end-position:
    • 52562
  • centisome-position:
    • 8.422546

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5945
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • CHLOROPHYLL-SYN
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7159
    • 5 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ19927&oldid=133661"