Difference between revisions of "SJ19949"

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(Created page with "Category:gene == Gene SJ16864 == * transcription-direction: ** positive * right-end-position: ** 191161 * left-end-position: ** 184418 * centisome-position: ** 66.86609...")
(Created page with "Category:gene == Gene SJ06894 == * transcription-direction: ** negative * right-end-position: ** 119022 * left-end-position: ** 110310 * centisome-position: ** 23.53968...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ16864 ==
+
== Gene SJ06894 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 191161
+
** 119022
 
* left-end-position:
 
* left-end-position:
−
** 184418
+
** 110310
 
* centisome-position:
 
* centisome-position:
−
** 66.86609    
+
** 23.53968    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[2-OCTAPRENYL-6-OHPHENOL-METHY-RXN]]
+
* [[3.6.4.5-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[2.1.1.64-RXN]]
+
* [[ATPASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DHHB-METHYLTRANSFER-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-11758]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12195]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12160]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12196]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9225]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[RXN0-5462]]
−
* [[RXN-9229]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9233]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9237]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9240]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN3O-102]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7210]]
−
* [[PWY-6708]]
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-7198]]
−
* [[PWY-5856]]
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-7184]]
−
* [[PWY-5871]]
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-6545]]
−
* [[PWY-5870]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[PWY-5855]]
+
{{#set: right-end-position=119022}}
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
{{#set: left-end-position=110310}}
−
* [[PWY-5873]]
+
{{#set: centisome-position=23.53968   }}
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5857]]
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5872]]
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY3O-19]]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7230]]
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7233]]
 
−
** '''3''' reactions found over '''10''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=191161}}
 
−
{{#set: left-end-position=184418}}
 
−
{{#set: centisome-position=66.86609   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=11}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=11}}
+
{{#set: nb pathway associated=4}}

Revision as of 13:06, 14 January 2021

Gene SJ06894

  • transcription-direction:
    • negative
  • right-end-position:
    • 119022
  • left-end-position:
    • 110310
  • centisome-position:
    • 23.53968

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ19949&oldid=84262"