Difference between revisions of "SJ19989"
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(Created page with "Category:gene == Gene SJ03706 == * transcription-direction: ** positive * right-end-position: ** 88561 * left-end-position: ** 87239 * centisome-position: ** 74.08203...") |
(Created page with "Category:gene == Gene SJ04782 == * transcription-direction: ** negative * right-end-position: ** 213969 * left-end-position: ** 209773 * centisome-position: ** 41.513233...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ04782 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 213969 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 209773 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 41.513233 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[1.1.1.145-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
− | {{#set: right-end-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | {{#set: left-end-position= | + | * [[1.1.1.170-RXN]] |
− | {{#set: centisome-position= | + | ** Category: [[annotation]] |
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12693]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12747]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12789]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-13926]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN66-18]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN66-23]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN66-313]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN66-318]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN66-342]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN66-350]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN66-353]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
+ | == Pathway(s) associated == | ||
+ | * [[PWY-6946]] | ||
+ | ** '''6''' reactions found over '''22''' reactions in the full pathway | ||
+ | * [[PWY-6944]] | ||
+ | ** '''2''' reactions found over '''25''' reactions in the full pathway | ||
+ | * [[PWY-6948]] | ||
+ | ** '''2''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY66-3]] | ||
+ | ** '''12''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY-6074]] | ||
+ | ** '''6''' reactions found over '''14''' reactions in the full pathway | ||
+ | * [[PWY66-4]] | ||
+ | ** '''14''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY66-341]] | ||
+ | ** '''14''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY66-378]] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7299]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=213969}} | ||
+ | {{#set: left-end-position=209773}} | ||
+ | {{#set: centisome-position=41.513233 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=13}} |
+ | {{#set: nb pathway associated=9}} |
Revision as of 18:48, 14 January 2021
Contents
Gene SJ04782
- transcription-direction:
- negative
- right-end-position:
- 213969
- left-end-position:
- 209773
- centisome-position:
- 41.513233
Organism(s) associated with this gene
Reaction(s) associated
- 1.1.1.145-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- 1.1.1.170-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12693
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-12747
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-12789
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-13926
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-18
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-23
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-313
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-318
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-342
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-350
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN66-353
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6946
- 6 reactions found over 22 reactions in the full pathway
- PWY-6944
- 2 reactions found over 25 reactions in the full pathway
- PWY-6948
- 2 reactions found over 18 reactions in the full pathway
- PWY66-3
- 12 reactions found over 18 reactions in the full pathway
- PWY-6074
- 6 reactions found over 14 reactions in the full pathway
- PWY66-4
- 14 reactions found over 4 reactions in the full pathway
- PWY66-341
- 14 reactions found over 18 reactions in the full pathway
- PWY66-378
- 3 reactions found over 6 reactions in the full pathway
- PWY-7299
- 1 reactions found over 2 reactions in the full pathway