Difference between revisions of "SJ20026"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ALLANTOATE ALLANTOATE] == * common-name: ** allantoate * smiles: ** c(c(=o)[o-])(nc(=o)n)nc(=o)...")
(Created page with "Category:gene == Gene SJ20026 == * transcription-direction: ** negative * right-end-position: ** 262511 * left-end-position: ** 248639 * centisome-position: ** 39.972057...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ALLANTOATE ALLANTOATE] ==
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== Gene SJ20026 ==
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* common-name:
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* transcription-direction:
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** allantoate
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** negative
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* smiles:
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* right-end-position:
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** c(c(=o)[o-])(nc(=o)n)nc(=o)n
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** 262511
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* inchi-key:
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* left-end-position:
−
** nucljnswzchrkl-uhfffaoysa-m
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** 248639
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* molecular-weight:
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* centisome-position:
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** 175.124
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** 39.972057   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[ALLANTOICASE-RXN]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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== Reaction(s) of unknown directionality ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=allantoate}}
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* [[ACETYLHOMOSER-CYS-RXN]]
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{{#set: inchi-key=inchikey=nucljnswzchrkl-uhfffaoysa-m}}
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** Category: [[orthology]]
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{{#set: molecular-weight=175.124}}
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[ACHMSSELCYSL]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[ACHMSSELCYSLh]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[CYSTATHIONINE-BETA-SYNTHASE-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[CYSTHIOCYS-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[HOMOCYSTEINE-DESULFHYDRASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[HOMOSERDEAM-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[LCYSDESULF-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[METBALT-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[O-SUCCHOMOSERLYASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12728]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14048]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14049]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-15128]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-15129]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-15130]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-15148]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9384]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[SUCHMSSELCYSL]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[SUCHMSSELCYSLh]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[SULFOCYS-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-5344]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[HOMOCYSDEGR-PWY]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-I9]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-801]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY66-426]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[HOMOSER-METSYN-PWY]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6936]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[LCYSDEG-PWY]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7870]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=262511}}
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{{#set: left-end-position=248639}}
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{{#set: centisome-position=39.972057    }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=21}}
 +
{{#set: nb pathway associated=9}}

Latest revision as of 11:03, 18 March 2021

Gene SJ20026

  • transcription-direction:
    • negative
  • right-end-position:
    • 262511
  • left-end-position:
    • 248639
  • centisome-position:
    • 39.972057

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5344
    • 2 reactions found over 2 reactions in the full pathway
  • HOMOCYSDEGR-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-I9
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-801
    • 3 reactions found over 4 reactions in the full pathway
  • PWY66-426
    • 2 reactions found over 6 reactions in the full pathway
  • HOMOSER-METSYN-PWY
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6936
    • 5 reactions found over 5 reactions in the full pathway
  • LCYSDEG-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7870
    • 2 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ20026&oldid=132783"